RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 NOXRED1Q6NXP6 359 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 HOMEZQ8IX15 550 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 FADS6Q8N9I5 356 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 CHDHQ8NE62 594 aaPredicted RBP13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 OR4K17Q8NGC6 315 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 OR4N2Q8NGD1 307 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 EFHD2Q96C19 240 aaPredicted RBP13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 ZNF764Q96H86 408 aaPredicted RBP13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 AMDHD1Q96NU7 426 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 PIGMQ9H3S5 423 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 GLIPR2Q9H4G4 154 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 SDHAF3Q9NRP4 125 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 CCM2LQ9NUG4 571 aaPredicted RBP13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 DKKL1Q9UK85 242 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 MRTO4Q9UKD2 239 aaKnown RBP13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 CCL27Q9Y4X3 112 aa13.02□□□□□ -0.33
SNRNP40-203ENST00000463988 LINC01387J3KSC0 135 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 UPK1AO00322 258 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 HCRTR2O43614 444 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 CRHP06850 196 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 CPA3P15088 417 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 DNASE1P24855 282 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 MC3RP41968 323 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 PCYT1AP49585 367 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 STARP49675 285 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 PSMD4P55036 377 aaKnown RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 B3GALT5-AS1P59052 145 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 FOXF2Q12947 444 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 GANABQ14697 944 aaKnown RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 KIAA0040Q15053 153 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 ZNHIT3Q15649 155 aaPredicted RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 DECR1Q16698 335 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 OR5M10Q6IEU7 315 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 TMEM107Q6UX40 140 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 RNF165Q6ZSG1 346 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 CDC26Q8NHZ8 85 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 MBD6Q96DN6 1003 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 ELP4Q96EB1 424 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 DACH2Q96NX9 599 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 LMF2Q9BU23 707 aaKnown RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 RBM24Q9BX46 236 aaKnown RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 LIME1Q9H400 295 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 Q9N2J8 555 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 DDX18Q9NVP1 670 aaKnown RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 FAM120CQ9NX05 1096 aaKnown RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 PPP4R1LQ9P1A2 415 aa13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 POLR3HQ9Y535 204 aaPredicted RBP13.01□□□□□ -0.33
SNRNP40-203ENST00000463988 MED12LQ86YW9 2145 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 B4DXG7 233 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 SLC28A1O00337 649 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 COPEO14579 308 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 IL33O95760 270 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 SHBGP04278 402 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 PEPDP12955 493 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 CLK3P49761 638 aaKnown RBP13□□□□□ -0.33
SNRNP40-203ENST00000463988 DIO3P55073 304 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 EEFSECP57772 596 aaKnown RBP13□□□□□ -0.33
SNRNP40-203ENST00000463988 LIPMQ5VYY2 423 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 OR2A2Q6IF42 318 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 CAMKMTQ7Z624 323 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 GRAMD2AQ8IUY3 354 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 OR2M3Q8NG83 312 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 LINC01560Q8TB33 94 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13□□□□□ -0.33
SNRNP40-203ENST00000463988 INTS12Q96CB8 462 aaKnown RBP13□□□□□ -0.33
SNRNP40-203ENST00000463988 ALPK1Q96QP1 1244 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 TRMOQ9BU70 441 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 TMUB1Q9BVT8 246 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 DSN1Q9H410 356 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 PTGES2Q9H7Z7 377 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 C3orf14Q9HBI5 128 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 TNFRSF12AQ9NP84 129 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 MID2Q9UJV3 735 aa13□□□□□ -0.33
SNRNP40-203ENST00000463988 FLNAP21333 2647 aaKnown RBP13□□□□□ -0.33
SNRNP40-203ENST00000463988 NIPBLQ6KC79 2804 aaeCLIP12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 A8MXE2 369 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 TBX19O60806 448 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 SEC22BO75396 215 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 TNFSF13O75888 250 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 SLC18A2Q05940 514 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 GLYR1Q49A26 553 aaPredicted RBP12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 SH2D4BQ5SQS7 431 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 PAMR1Q6UXH9 720 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 CHMP1BQ7LBR1 199 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 TGIF2LYQ8IUE0 185 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 GSPT2Q8IYD1 628 aaKnown RBP12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 CCDC63Q8NA47 563 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 UBLCP1Q8WVY7 318 aaPredicted RBP12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 HOXB13Q92826 284 aaPredicted RBP12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 FCRL1Q96LA6 429 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 CCT7Q99832 543 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 IQCGQ9H095 443 aaKnown RBP12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 HHATLQ9HCP6 504 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 C1orf109Q9NX04 203 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 GALNT8Q9NY28 637 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 PACSIN3Q9UKS6 424 aa12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 RPH3AQ9Y2J0 694 aaPredicted RBP12.99□□□□□ -0.33
SNRNP40-203ENST00000463988 IGLV3-32A0A0A0MS00 114 aa12.98□□□□□ -0.33
SNRNP40-203ENST00000463988 A0A1W2PNV4 684 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms