RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SIX6O95475 246 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SRPRAP08240 638 aaKnown RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 PTHLHP12272 177 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TRIM23P36406 574 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 GPR4P46093 362 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 KCNJ5P48544 419 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TPMTP51580 245 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 AP1S2P56377 157 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 EFNB1P98172 346 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SYTL3Q4VX76 610 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 C6orf120Q7Z4R8 191 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 SERINC5Q86VE9 423 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 OR4Q3Q8NH05 313 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TEX47Q8TBZ9 253 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 KAT2AQ92830 837 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ARSGQ96EG1 525 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 MS4A4AQ96JQ5 239 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF354BQ96LW1 612 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 TEFMQ96QE5 360 aaKnown RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 FUZQ9BT04 418 aa11□□□□□ -0.65
CPSF3-202ENST00000460593 ADARB2Q9NS39 739 aaKnown RBP11□□□□□ -0.65
CPSF3-202ENST00000460593 KIAA1671Q9BY89 1806 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 MAGEB4O15481 346 aaPredicted RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 FZD7O75084 574 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF821O75541 412 aaPredicted RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 IFNA16P05015 189 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 MRPL3P09001 348 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 SULT1A3P0DMM9 295 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 SULT1A4P0DMN0 295 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 FUT1P19526 365 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ATP5A1P25705 553 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ACVR1BP36896 505 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 RPL35P42766 123 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 RNF144AP50876 292 aaPredicted RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 TBPL1P62380 186 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 SMAD3P84022 425 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 MINDY4Q4G0A6 757 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 SLC27A4Q6P1M0 643 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 DGLUCYQ7Z3D6 616 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 GANCQ8TET4 914 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 YIPF5Q969M3 257 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ORAI1Q96D31 301 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ALG14Q96F25 216 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 RADILQ96JH8 1075 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 IL17FQ96PD4 163 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 OR2M2Q96R28 347 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 PTPN18Q99952 460 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF436Q9C0F3 470 aaPredicted RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 BRF2Q9HAW0 419 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 IFT46Q9NQC8 304 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 NANSQ9NR45 359 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 B4GALT6Q9UBX8 382 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 PLAGL1Q9UM63 463 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 EXOSC1Q9Y3B2 195 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 FKBP7Q9Y680 259 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 A0A087WUU8 490 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 SERTM1A2A2V5 107 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 MFSD2BA6NFX1 497 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 CPSF4LA6NMK7 179 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 MMP20O60882 483 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 PRKRAO75569 313 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 KDM4BO94953 1096 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 CBX7O95931 251 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 APOC3P02656 99 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 DRD2P14416 443 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ZP3P21754 424 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ACSL1P33121 698 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 VEGFCP49767 419 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 AKR1D1P51857 326 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 DSG2Q14126 1118 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 CDKL4Q5MAI5 379 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 CLVS2Q5SYC1 327 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 NHLRC1Q6VVB1 395 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 Q6ZVL8 140 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 CHST9Q7L1S5 443 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 C11orf96Q7Z7L8 435 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 OAFQ86UD1 273 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 LINC00518Q8N0U6 118 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 KLHL36Q8N4N3 616 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 LSM14AQ8ND56 463 aaKnown RBP10.99□□□□□ -0.65
CPSF3-202ENST00000460593 MORN4Q8NDC4 146 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 OR51Q1Q8NH59 317 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF649Q9BS31 505 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 SHARPINQ9H0F6 387 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 DMRT3Q9NQL9 472 aa10.99□□□□□ -0.65
CPSF3-202ENST00000460593 FAM170BA6NMN3 283 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 AGAP14A8MT82 685 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 RNF13O43567 381 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 ADRB1P08588 477 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 UQCRC2P22695 453 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 CD70P32970 193 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 AHRP35869 848 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 PIP5KL1Q5T9C9 394 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 SHEQ5VZ18 495 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 RETSATQ6NUM9 610 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 SFXN4Q6P4A7 337 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 SMARCD3Q6STE5 483 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 FAM198BQ6UWH4 519 aa10.98□□□□□ -0.65
CPSF3-202ENST00000460593 LRRC28Q86X40 367 aaPredicted RBP10.98□□□□□ -0.65
CPSF3-202ENST00000460593 TMEM99Q8N816 258 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms