RNA–Protein interactions for RNA: ENST00000452483.1

HMGB3P21-201, Transcript of high mobility group box 3 pseudogene 21, humanhuman

BASIC

Gene HMGB3P21, Length 547 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P21-201ENST00000452483 ZNF786Q8N393 782 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 KBTBD3Q8NAB2 608 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 NOA1Q8NC60 698 aaKnown RBP4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 CCDC197Q8NCU1 140 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 ZNF548Q8NEK5 533 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 CCDC26Q8TAB7 109 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 CA5BP1Q8WTZ4 195 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 CCDC107Q8WV48 283 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 ACOT11Q8WXI4 607 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 MYLPFQ96A32 169 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 OTUB2Q96DC9 234 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 SCRN2Q96FV2 425 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 SNF8Q96H20 258 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 ZNF419Q96HQ0 510 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 SERAC1Q96JX3 654 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 BTBD10Q9BSF8 475 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 ZNF747Q9BV97 191 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 RHOJQ9H4E5 214 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 RNF121Q9H920 327 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 RAVER2Q9HCJ3 691 aaKnown RBP4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 OR2S2Q9NQN1 319 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 TREX1Q9NSU2 369 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 MYEF2Q9P2K5 600 aaKnown RBP4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 LRRC42Q9Y546 428 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 ETV7Q9Y603 341 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 PLB1Q6P1J6 1458 aa4.03□□□□□ -1.76
HMGB3P21-201ENST00000452483 LRPPRCP42704 1394 aaKnown RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ANTXRLA6NF34 631 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 LRRC3CA6NJW4 275 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SMIM23A6NLE4 172 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CCT8L1PA6NM43 557 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 YJEFN3A6XGL0 299 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ERI2A8K979 691 aaKnown RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 B4DGG1 531 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 RFXANKO14593 260 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 LATO43561 262 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 LDB2O43679 373 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CLDN9O95484 217 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ETHE1O95571 254 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CST4P01036 141 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 VTNP04004 478 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 IL6P05231 212 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SERPINA6P08185 405 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 NPSP0C0P6 89 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ELFN1P0C7U0 828 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 TRIM49P0CI25 452 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 TRIM49CP0CI26 452 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CYP2D6P10635 497 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 UNGP13051 313 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CNR1P21554 472 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CD1CP29017 333 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 APOBEC3AP31941 199 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SFTPDP35247 375 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 UGT2B10P36537 528 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SLC26A3P40879 764 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ACTR1BP42025 376 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 NKX2-1P43699 371 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 HTR5AP47898 357 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 DUSP3P51452 185 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CTSCP53634 463 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 OR2B6P58173 313 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 FAM27E3Q08E93 113 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 PNRC1Q12796 327 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SLAMF1Q13291 335 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 KRT81Q14533 505 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 FAM189A2Q15884 450 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SGCAQ16586 387 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SPDYE7PQ495Y7 208 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 PDCD4Q53EL6 469 aaKnown RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ALG10Q5BKT4 473 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 RNASE12Q5GAN4 147 aaKnown RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 COQ5Q5HYK3 327 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ALG10BQ5I7T1 473 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 OTUD3Q5T2D3 398 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 FRG2Q64ET8 278 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 TIGD3Q6B0B8 471 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 TMEM65Q6PI78 240 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ASCL4Q6XD76 172 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ZNF546Q86UE3 836 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CACUL1Q86Y37 369 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ERI1Q8IV48 349 aaKnown RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 MB21D2Q8IYB1 491 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 RBFAQ8N0V3 343 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 LGI2Q8N0V4 545 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 PARP8Q8N3A8 854 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 TMEM132CQ8N3T6 1108 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 FGFRL1Q8N441 504 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 CLDN19Q8N6F1 224 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 LINC01465Q8N7H1 131 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 LRRC57Q8N9N7 239 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 FAM98AQ8NCA5 519 aaKnown RBP4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 MDGA1Q8NFP4 955 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 OR1F12Q8NHA8 337 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 LRRC15Q8TF66 581 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 TCP11Q8WWU5 503 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 HSD17B8Q92506 261 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 ESR2Q92731 530 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 P3H4Q92791 437 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 SLC25A36Q96CQ1 311 aa4.02□□□□□ -1.77
HMGB3P21-201ENST00000452483 C9orf72Q96LT7 481 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms