RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 TRMOQ9BU70 441 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 MECRQ9BV79 373 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 DSN1Q9H410 356 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 SLC24A3Q9HC58 644 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 DDX18Q9NVP1 670 aaKnown RBP18.82■□□□□ 0.6
SDC1-205ENST00000447124 CRIM1Q9NZV1 1036 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 MID2Q9UJV3 735 aa18.82■□□□□ 0.6
SDC1-205ENST00000447124 GXYLT2A0PJZ3 443 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 TMEM233B4DJY2 109 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 AKAP10O43572 662 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 SCO2O43819 266 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 SPAG7O75391 227 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 CTAG2O75638 210 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 CREB1P16220 341 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 TCEA1P23193 301 aaKnown RBP18.81■□□□□ 0.6
SDC1-205ENST00000447124 DPP4P27487 766 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 EVI2BP34910 448 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 CLDN18P56856 261 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 ARL13AQ5H913 290 aaPredicted RBP18.81■□□□□ 0.6
SDC1-205ENST00000447124 ENPP6Q6UWR7 440 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 TMEM200AQ86VY9 491 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 IFNEQ86WN2 208 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 FADS6Q8N9I5 356 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 TSSK3Q96PN8 268 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 FAM111AQ96PZ2 611 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 UCN2Q96RP3 112 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 REEP4Q9H6H4 257 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 JKAMPQ9P055 326 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 MED11Q9P086 117 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 LGALS13Q9UHV8 139 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 RPH3AQ9Y2J0 694 aaPredicted RBP18.81■□□□□ 0.6
SDC1-205ENST00000447124 TRAF6Q9Y4K3 522 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 ABCA4P78363 2273 aa18.81■□□□□ 0.6
SDC1-205ENST00000447124 FAM221AA4D161 298 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 LSM1O15116 133 aaKnown RBP18.8■□□□□ 0.6
SDC1-205ENST00000447124 TBX19O60806 448 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 ZWINTO95229 277 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 IL33O95760 270 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 IGKV1D-16P01601 117 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 ARRB2P32121 409 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 GABRA3P34903 492 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 GCKP35557 465 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 MAP3K8P41279 467 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 MRPS22P82650 360 aaKnown RBP18.8■□□□□ 0.6
SDC1-205ENST00000447124 RCAN2Q14206 197 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 OR2M3Q8NG83 312 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 CLHC1Q8NHS4 586 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 HOXB13Q92826 284 aaPredicted RBP18.8■□□□□ 0.6
SDC1-205ENST00000447124 SFXN2Q96NB2 322 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 CCT7Q99832 543 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 GIMAP2Q9UG22 337 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 DKKL1Q9UK85 242 aa18.8■□□□□ 0.6
SDC1-205ENST00000447124 MED12LQ86YW9 2145 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 CLCA1A8K7I4 914 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 H0Y3Z8 333 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 PDPK1O15530 556 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 NPHS1O60500 1241 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 RCBTB2O95199 551 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 IL18BPO95998 194 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 IFI6P09912 130 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 TMIGD3P0DMS9 266 aaPredicted RBP18.79■□□□□ 0.6
SDC1-205ENST00000447124 PRPS2P11908 318 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 ZNF708P17019 499 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 CHMP24386 653 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 OPRM1P35372 400 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 DSCR4P56555 118 aaPredicted RBP18.79■□□□□ 0.6
SDC1-205ENST00000447124 CLDN15P56746 228 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 HSPB3Q12988 150 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 PDE7AQ13946 482 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 DECR1Q16698 335 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 APOOLQ6UXV4 268 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 MARCH3Q86UD3 253 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 RIBC1Q8N443 379 aaPredicted RBP18.79■□□□□ 0.6
SDC1-205ENST00000447124 OR4K17Q8NGC6 315 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 TCP10LQ8TDR4 215 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 AENQ8WTP8 325 aaKnown RBP18.79■□□□□ 0.6
SDC1-205ENST00000447124 DUSP19Q8WTR2 217 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 WNT2BQ93097 391 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 ZNF764Q96H86 408 aaPredicted RBP18.79■□□□□ 0.6
SDC1-205ENST00000447124 Q9N2J8 555 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 DNAJB12Q9NXW2 375 aaKnown RBP18.79■□□□□ 0.6
SDC1-205ENST00000447124 SH3BP4Q9P0V3 963 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 PPP4R1LQ9P1A2 415 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 CLCF1Q9UBD9 225 aa18.79■□□□□ 0.6
SDC1-205ENST00000447124 PRRC2AP48634 2157 aaKnown RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 TGM6O95932 706 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 DNAJA1P31689 397 aaKnown RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 FRKP42685 505 aaPredicted RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 DGKQP52824 942 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 RPL38P63173 70 aaKnown RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 AAGABQ6PD74 315 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 ZCCHC23Q6ZST2 131 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 EXOC3L1Q86VI1 746 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 TWIST2Q8WVJ9 160 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 PIK3R3Q92569 461 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 INTS12Q96CB8 462 aaKnown RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 GIMAP5Q96F15 307 aa18.78■□□□□ 0.6
SDC1-205ENST00000447124 GPATCH1Q9BRR8 931 aaKnown RBP18.78■□□□□ 0.6
SDC1-205ENST00000447124 ROPN1BQ9BZX4 212 aaPredicted RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms