RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 IGLON5A6NGN9 336 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 NPIPB15A6NHN6 443 aaPredicted RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 CHRNGP07510 517 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 MXD1Q05195 221 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 LIPEQ05469 1076 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SGO1Q5FBB7 561 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 KIAA0895LQ68EN5 471 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SCIMPQ6UWF3 145 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 ANKRD46Q86W74 232 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 PRSS58Q8IYP2 241 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 ZNF248Q8NDW4 579 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 STK35Q8TDR2 534 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SELENOMQ8WWX9 145 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 FAIM2Q9BWQ8 316 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 EPHX3Q9H6B9 360 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 VAPAQ9P0L0 249 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 MMP12P39900 470 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 TCEA2Q15560 299 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 BCL2L15Q5TBC7 163 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 MZT2AQ6P582 158 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 LDB1Q86U70 411 aaPredicted RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 GHDCQ8N2G8 530 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 PGBD5Q8N414 524 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SPEM1Q8N4L4 309 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SMPDL3AQ92484 453 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 FGF14Q92915 247 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 C12orf66Q96MD2 445 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 FCRL3Q96P31 734 aaPredicted RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 EFCAB11Q9BUY7 163 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 TMPRSS5Q9H3S3 457 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 UNKLQ9H9P5 680 aaKnown RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 EQTNQ9NQ60 294 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 DNAJB9Q9UBS3 223 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 OR51F1A6NGY5 319 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 MPTX1A8MV57 137 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 MRPS14O60783 128 aaKnown RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 FDXRP22570 491 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 CRABP1P29762 137 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 OPRD1P41143 372 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 CLCNKAP51800 687 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 NDUFA9Q16795 377 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 XKR6Q5GH73 641 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 ARL13AQ5H913 290 aaPredicted RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 PAQR3Q6TCH7 311 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 ALKAL2Q6UX46 152 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 CCDC190Q86UF4 302 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 WFDC5Q8TCV5 224 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 MAPK15Q8TD08 544 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 ZDHHC1Q8WTX9 485 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 WBP2Q969T9 261 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 RFT1Q96AA3 541 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 TPD52L3Q96J77 140 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 KCNA7Q96RP8 456 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SH3BP4Q9P0V3 963 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 HS3ST3A1Q9Y663 406 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 FAM86C2PA6NEL3 165 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 PPM1DO15297 605 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 CIDEAO60543 219 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 PRKRAO75569 313 aaKnown RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 BPNT1O95861 308 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 RGRP47804 291 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 DDX39BQ13838 428 aaKnown RBP9.26□□□□□ -0.93
USP54-205ENST00000424265 PEA15Q15121 130 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 TRAM1Q15629 374 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 AARDQ4LEZ3 155 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 KLHL22Q53GT1 634 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 FGD2Q7Z6J4 655 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 IGDCC3Q8IVU1 814 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 Q8N402 240 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SPACA1Q9HBV2 294 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 SCP2D1Q9UJQ7 156 aa9.26□□□□□ -0.93
USP54-205ENST00000424265 MOSPD3O75425 235 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 CLDN9O95484 217 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 EGFP01133 1207 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 TLX1P31314 330 aaPredicted RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 CCR5P51681 352 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 TSNQ15631 228 aaKnown RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 ADAMTSL4Q6UY14 1074 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 KANSL1Q7Z3B3 1105 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 LHFPL3Q86UP9 236 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 CAMKVQ8NCB2 501 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 BVESQ8NE79 360 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 WDR20Q8TBZ3 569 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ZNF559Q9BR84 538 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 TIMM29Q9BSF4 260 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 GATA5Q9BWX5 397 aaPredicted RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 RIMS4Q9H426 269 aaPredicted RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 SEMA4BQ9NPR2 832 aaPredicted RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 ACSS2Q9NR19 701 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 DNASE2O00115 360 aaPredicted RBP9.25□□□□□ -0.93
USP54-205ENST00000424265 QDPRP09417 244 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ACP5P13686 325 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 RFX2P48378 723 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 DNAJB13P59910 316 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 IRF4Q15306 451 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 IL27RAQ6UWB1 636 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 REC114Q7Z4M0 266 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 HUS1BQ8NHY5 278 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 ZNF675Q8TD23 568 aa9.25□□□□□ -0.93
USP54-205ENST00000424265 TEFMQ96QE5 360 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms