RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TAS2R38P59533 333 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 HABP2Q14520 560 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GINS1Q14691 196 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 KIR2DS5Q14953 304 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SYPL2Q5VXT5 272 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 FIGNL1Q6PIW4 674 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 NOXA1Q86UR1 476 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 METTL25Q8N6Q8 603 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 KCNE4Q8WWG9 221 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZUFSPQ96AP4 578 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 LRCH3Q96II8 777 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 C7orf34Q96L11 122 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 UTP23Q9BRU9 249 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SLC25A31Q9H0C2 315 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF286AQ9HBT8 521 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GPR83Q9NYM4 423 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 PLEK2Q9NYT0 353 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 B4GALT6Q9UBX8 382 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SLC6A5Q9Y345 797 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SURF4O15260 269 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ITGB2P05107 769 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 PKLRP30613 574 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GCGRP47871 477 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 FNTBP49356 437 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 P2RX1P51575 399 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 RPL11P62913 178 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF33BQ06732 778 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SLC39A5Q6ZMH5 540 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 WDR53Q7Z5U6 358 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 BTBD2Q9BX70 525 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 B3GAT1Q9P2W7 334 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 EXTL2Q9UBQ6 330 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF223Q9UK11 482 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 HMX3A6NHT5 357 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 F5H5K5 113 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 AIPO00170 330 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 FANCGO15287 622 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 NARSO43776 548 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GPR137BO60478 399 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GABRR1P24046 479 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CD34P28906 385 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 RAB13P51153 203 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CTXN1P60606 82 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF181Q2M3W8 571 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZADH2Q8N4Q0 377 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TEX26Q8N6G2 289 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ASCC1Q8N9N2 400 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ACVR1CQ8NER5 493 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 WDR20Q8TBZ3 569 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 STK35Q8TDR2 534 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CREB3L4Q8TEY5 395 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 C10orf82Q8WW14 230 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 FOXRED1Q96CU9 486 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TSNAXQ99598 290 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 NWD2Q9ULI1 1742 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 RP1P56715 2156 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 A0A1W2PPV4 95 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 FEZF1A0PJY2 475 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 K7EQM0 130 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GMDSO60547 372 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 IFNA17P01571 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SERPINA5P05154 406 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A6P0DMU7 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A5P0DMU8 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A7P0DMV0 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A8P0DMV1 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A9P0DMV2 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TACR3P29371 465 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF404Q494X3 552 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A2Q5DJT8 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A1Q5HYN5 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ACBD7Q8N6N7 88 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ACBD4Q8NC06 268 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CMASQ8NFW8 434 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 OR4K1Q8NGD4 311 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CT45A3Q8NHU0 189 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 RHEBL1Q8TAI7 183 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 NANPQ8TBE9 248 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 BRI3BPQ8WY22 251 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 PSMF1Q92530 271 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GINS3Q9BRX5 216 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 MAGIXQ9H6Y5 334 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GPN2Q9H9Y4 310 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ERVK13-1Q9NX77 482 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ZDHHC7Q9NXF8 308 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 KCND3Q9UK17 655 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 WIF1Q9Y5W5 379 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 AKAP11Q9UKA4 1901 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CASC3O15234 703 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 OR2T1O43869 369 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SIX3O95343 332 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 PIGRP01833 764 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 MAS1P04201 325 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 UNGP13051 313 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 MAOAP21397 527 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 NAA10P41227 235 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 VEGFCP49767 419 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 ATXN7L3Q14CW9 347 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 RNASE10Q5GAN6 216 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 AGAP7PQ5VUJ5 663 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms