RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ZDHHC18Q9NUE0 388 aa7.29□□□□□ -1.24
VIM-202ENST00000421459 ZNF226Q9NYT6 803 aa7.29□□□□□ -1.24
VIM-202ENST00000421459 PPP4R1LQ9P1A2 415 aa7.29□□□□□ -1.24
VIM-202ENST00000421459 VPS29Q9UBQ0 182 aa7.29□□□□□ -1.24
VIM-202ENST00000421459 DMGDHQ9UI17 866 aaKnown RBP7.29□□□□□ -1.24
VIM-202ENST00000421459 PSME2Q9UL46 239 aa7.29□□□□□ -1.24
VIM-202ENST00000421459 MRPS18CQ9Y3D5 142 aaKnown RBP7.29□□□□□ -1.24
VIM-202ENST00000421459 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.28□□□□□ -1.24
VIM-202ENST00000421459 OR2M5A3KFT3 312 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 FAM171A2A8MVW0 826 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 PCDH7O60245 1069 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 FADS1O60427 444 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 GUCY1B2O75343 617 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 OTCP00480 354 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 RBP1P09455 135 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 PEPDP12955 493 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 FPR1P21462 350 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 EVI2BP34910 448 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 KRT20P35900 424 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 HSD17B3P37058 310 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 MAGEA12P43365 314 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 PNLIPRP2P54317 469 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 PSG6Q00889 435 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 CAV1Q03135 178 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 KRTAP1-1Q07627 177 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 ZNF155Q12901 538 aaPredicted RBP7.28□□□□□ -1.24
VIM-202ENST00000421459 TNK1Q13470 666 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 EFR3AQ14156 821 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 GUSBP1Q15486 140 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 BCL2A1Q16548 175 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 UNC50Q53HI1 259 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 LGSNQ5TDP6 509 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 METTL2BQ6P1Q9 378 aaKnown RBP7.28□□□□□ -1.24
VIM-202ENST00000421459 PRSS57Q6UWY2 283 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 APOOLQ6UXV4 268 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 CXXC5Q7LFL8 322 aaKnown RBP7.28□□□□□ -1.24
VIM-202ENST00000421459 CCDC91Q7Z6B0 441 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 GALNT10Q86SR1 603 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 MEIOBQ8N635 442 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 CDC26Q8NHZ8 85 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 ZNF675Q8TD23 568 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 IGFBPL1Q8WX77 278 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 KCNA7Q96RP8 456 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 SLC39A3Q9BRY0 314 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 LRRC1Q9BTT6 524 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 FAIM2Q9BWQ8 316 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 ACPTQ9BZG2 426 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 RNF122Q9H9V4 155 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 BRF2Q9HAW0 419 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 SNX6Q9UNH7 406 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 PROCRQ9UNN8 238 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 OR10H1Q9Y4A9 318 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 TIMM22Q9Y584 194 aa7.28□□□□□ -1.24
VIM-202ENST00000421459 DOCK7Q96N67 2140 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 GNG14A0A1W2PPG7 69 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 GXYLT2A0PJZ3 443 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 CCDC189A1A4V9 331 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 TRIM49D1C9J1S8 452 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 POC1B-GALNT4F8VUJ3 575 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 EMC8O43402 210 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 ABCB7O75027 752 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 TNFRSF21O75509 655 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 IGKV1D-16P01601 117 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 JUNP05412 331 aaKnown RBP7.27□□□□□ -1.25
VIM-202ENST00000421459 CRHP06850 196 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 TBXA2RP21731 343 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 TRA2BP62995 288 aaKnown RBP7.27□□□□□ -1.25
VIM-202ENST00000421459 EEF1A1P68104 462 aaKnown RBP7.27□□□□□ -1.25
VIM-202ENST00000421459 PPP2R2BQ00005 443 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 CLCQ05315 142 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 TSC22D1Q15714 1073 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 ERCC6LQ2NKX8 1250 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 CTU2Q2VPK5 515 aaKnown RBP7.27□□□□□ -1.25
VIM-202ENST00000421459 EEF1A1P5Q5VTE0 462 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 OR2A2Q6IF42 318 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 TMEM107Q6UX40 140 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 STAC2Q6ZMT1 411 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 PLEKHM3Q6ZWE6 761 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 ATG4DQ86TL0 474 aaPredicted RBP7.27□□□□□ -1.25
VIM-202ENST00000421459 GGNQ86UU5 652 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 EXOC3L1Q86VI1 746 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 WFDC8Q8IUA0 241 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 CEP112Q8N8E3 955 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 RAB3IL1Q8TBN0 382 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 DCAKDQ8WVC6 231 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 PLPPR2Q96GM1 343 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 PAFAH2Q99487 392 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 REPIN1Q9BWE0 567 aaKnown RBP7.27□□□□□ -1.25
VIM-202ENST00000421459 GSX2Q9BZM3 304 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 RAB17Q9H0T7 212 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 ACSS3Q9H6R3 686 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 SLC35C2Q9NQQ7 365 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 ELOVL5Q9NYP7 299 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 MCM8Q9UJA3 840 aa7.27□□□□□ -1.25
VIM-202ENST00000421459 EXPH5Q8NEV8 1989 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 MYO1GB0I1T2 1018 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 RNF223E7ERA6 249 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 UPK1AO00322 258 aa7.26□□□□□ -1.25
VIM-202ENST00000421459 EIF1AYO14602 144 aaKnown RBP7.26□□□□□ -1.25
VIM-202ENST00000421459 DLX3O60479 287 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms