RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ACVR2AP27037 513 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 MAOBP27338 520 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 IFNA8P32881 189 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 TRIM23P36406 574 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 SLC15A1P46059 708 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 CCR4P51679 360 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 C21orf58P58505 322 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 GPR18Q14330 331 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 DUSP5Q16690 384 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 NDUFAF6Q330K2 333 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 SLC27A4Q6P1M0 643 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 SYCE2Q6PIF2 218 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 TAF8Q7Z7C8 310 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 CPOQ8IVL8 374 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 IL17RCQ8NAC3 791 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 OR10H4Q8NGA5 316 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 SLC30A2Q9BRI3 323 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 TPSD1Q9BZJ3 242 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 LRRN3Q9H3W5 708 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 SMURF1Q9HCE7 757 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 HRASLS2Q9NWW9 162 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 ABCA7Q8IZY2 2146 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 A0A1W2PQL4 384 aaPredicted RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 K7EQS6 105 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 SEMA3DO95025 777 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 CLUP10909 449 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 NTSR1P30989 418 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 HCCSP53701 268 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 CSNK2BP67870 215 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 MAT1AQ00266 395 aaKnown RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 RGS1Q08116 209 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 BAK1Q16611 211 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 ANKK1Q8NFD2 765 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 RPLP0P6Q8NHW5 317 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 RIPOR3Q96MK2 946 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 GFM1Q96RP9 751 aaKnown RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 ENKD1Q9H0I2 346 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 RSPH9Q9H1X1 276 aaPredicted RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 SLC38A1Q9H2H9 487 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 MAN2C1Q9NTJ4 1040 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 HCN3Q9P1Z3 774 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 PCDHGA4Q9Y5G9 962 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 SPAG17Q6Q759 2223 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 RTTNQ86VV8 2226 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 A8MUA0 341 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 PKLRP30613 574 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 FAM27D1Q5T7N8 215 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 NXNL2Q5VZ03 156 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 GDPD3Q7L5L3 318 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 ZNF367Q7RTV3 350 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 TM9SF4Q92544 642 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 ABHD8Q96I13 439 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 COL6A3P12111 3177 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 FAM171A2A8MVW0 826 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 CCNKO75909 580 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 PCSK2P16519 638 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 HOXB6P17509 224 aaKnown RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 GCGRP47871 477 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 ILKQ13418 452 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 RUNX2Q13950 521 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 MAPK14Q16539 360 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 SNAP47Q5SQN1 464 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 VN1R4Q7Z5H5 301 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 ASPGQ86U10 573 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 COX18Q8N8Q8 333 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 DACT3Q96B18 629 aaPredicted RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 TRIM45Q9H8W5 580 aaPredicted RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 FBXL4Q9UKA2 621 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 COLEC10Q9Y6Z7 277 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 A8MVJ9 347 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 ASNA1O43681 348 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 LALBAP00709 142 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 F3P13726 295 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 IGFBP4P22692 258 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 GABRA3P34903 492 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 MTNR1AP48039 350 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 MRPS15P82914 257 aaKnown RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 PDZK1Q5T2W1 519 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 CCDC80Q76M96 950 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 SYT9Q86SS6 491 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 AKAP14Q86UN6 197 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 PHC2Q8IXK0 858 aa12.53□□□□□ -0.4
VPS54-203ENST00000409558 CCDC86Q9H6F5 360 aaKnown RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 GPC6Q9Y625 555 aaPredicted RBP12.53□□□□□ -0.4
VPS54-203ENST00000409558 TCRBV21S2A2A0A5A6 115 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 CDC42EP2O14613 210 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 EMC8O43402 210 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 OR10H2O60403 315 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 ZIC2O95409 532 aaPredicted RBP12.52□□□□□ -0.4
VPS54-203ENST00000409558 IFI30P13284 250 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 LAMP2P13473 410 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 GRPRP30550 384 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 SMSP52788 366 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 IRF3Q14653 427 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 ARHGAP19Q14CB8 494 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 TIMM50Q3ZCQ8 353 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 SLC48A1Q6P1K1 146 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 TMEM52Q8NDY8 209 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 FBXO8Q9NRD0 319 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms