RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CACNA1AO00555 2505 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 A0A0G2JPF8 293 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 TMEM200CA6NKL6 621 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 A6NL46 340 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 HNRNPCL2B2RXH8 293 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 HNRNPCL3B7ZW38 293 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 PGM3O95394 542 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 CHRM4P08173 479 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 HNRNPCL4P0DMR1 293 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 MS4A2Q01362 244 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 GPR68Q15743 365 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 C1orf146Q5VVC0 180 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 DHFR2Q86XF0 187 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 PROSER1Q86XN7 944 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 PTRH1Q86Y79 214 aaKnown RBP16.68■□□□□ 0.26
SDC1-203ENST00000403076 GALNT16Q8N428 558 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 BBS10Q8TAM1 723 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 EFHD2Q96C19 240 aaPredicted RBP16.68■□□□□ 0.26
SDC1-203ENST00000403076 ASB9Q96DX5 294 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 OMA1Q96E52 524 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 ZNF354BQ96LW1 612 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 LRGUKQ96M69 825 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 TREX2Q9BQ50 279 aaPredicted RBP16.68■□□□□ 0.26
SDC1-203ENST00000403076 CACYBPQ9HB71 228 aaKnown RBP16.68■□□□□ 0.26
SDC1-203ENST00000403076 FBXO34Q9NWN3 711 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 TEKT2Q9UIF3 430 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 MKLN1Q9UL63 735 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 POMPQ9Y244 141 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 YARS2Q9Y2Z4 477 aaKnown RBP16.68■□□□□ 0.26
SDC1-203ENST00000403076 NPFFR2Q9Y5X5 522 aa16.68■□□□□ 0.26
SDC1-203ENST00000403076 ARPC2O15144 300 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 ITGA10O75578 1167 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 CAPNS1P04632 268 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 ABCD3P28288 659 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 MLF1P58340 268 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 CHRNEQ04844 493 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 TRAP1Q12931 704 aaKnown RBP16.67■□□□□ 0.26
SDC1-203ENST00000403076 FLOT2Q14254 428 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 MAPK11Q15759 364 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 LRRC23Q53EV4 343 aaPredicted RBP16.67■□□□□ 0.26
SDC1-203ENST00000403076 PRAMEF8Q5VWM4 474 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 PRAMEF7Q5VXH5 474 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 B3GNTL1Q67FW5 361 aaPredicted RBP16.67■□□□□ 0.26
SDC1-203ENST00000403076 CYP2R1Q6VVX0 501 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 PATL1Q86TB9 770 aaKnown RBP16.67■□□□□ 0.26
SDC1-203ENST00000403076 KRT73Q86Y46 540 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 SLC15A4Q8N697 577 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 FAM110BQ8TC76 370 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 SLC26A7Q8TE54 656 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 NSMCE2Q96MF7 247 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 ZNF607Q96SK3 696 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 ADOQ96SZ5 270 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 SLC38A1Q9H2H9 487 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 RUBCNLQ9H714 662 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 MTHFD2LQ9H903 347 aaPredicted RBP16.67■□□□□ 0.26
SDC1-203ENST00000403076 ZBTB20Q9HC78 741 aaPredicted RBP16.67■□□□□ 0.26
SDC1-203ENST00000403076 ACTR3BQ9P1U1 418 aa16.67■□□□□ 0.26
SDC1-203ENST00000403076 M0QX08 132 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 HS6ST1O60243 411 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 FCMRO60667 390 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 PDE9AO76083 593 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 IL33O95760 270 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 IGKV1D-16P01601 117 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 SSR4P51571 173 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 CCL11P51671 97 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 TLE3Q04726 772 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 MEP1AQ16819 746 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 FLYWCH1Q4VC44 716 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 ABHD17BQ5VST6 288 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 H3F3CQ6NXT2 135 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 FRRS1Q6ZNA5 592 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 TMEM156Q8N614 296 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 PSMF1Q92530 271 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 DIO2Q92813 273 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 RASL10BQ96S79 203 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 TRIM15Q9C019 465 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 ZNF350Q9GZX5 532 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 BCL2L10Q9HD36 194 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 POLE3Q9NRF9 147 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 SSUH2Q9Y2M2 353 aa16.66■□□□□ 0.26
SDC1-203ENST00000403076 MAN1A2O60476 641 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 PPM1BO75688 479 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 NADKO95544 446 aaPredicted RBP16.65■□□□□ 0.26
SDC1-203ENST00000403076 IFNA14P01570 189 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 KDELR2P33947 212 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 TMED10P49755 219 aaKnown RBP16.65■□□□□ 0.26
SDC1-203ENST00000403076 POLE2P56282 527 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 RAPSNQ13702 412 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 FXNQ16595 210 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ACER2Q5QJU3 275 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 TYW3Q6IPR3 259 aaKnown RBP16.65■□□□□ 0.26
SDC1-203ENST00000403076 OPN5Q6U736 354 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ZAR1Q86SH2 424 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 SPPL2CQ8IUH8 684 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ZNF619Q8N2I2 560 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 OR5M3Q8NGP4 307 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ASB15Q8WXK1 588 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ZCCHC14Q8WYQ9 949 aaKnown RBP16.65■□□□□ 0.26
SDC1-203ENST00000403076 COL21A1Q96P44 957 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 SPATA5L1Q9BVQ7 753 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms