RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 TRAPPC2P0DI81 140 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 TRAPPC2BP0DI82 140 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 PKLRP30613 574 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 DESI1Q6ICB0 168 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 OR5D14Q8NGL3 314 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 C14orf79Q96F83 325 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 LRIG1Q96JA1 1093 aa12.79□□□□□ -0.36
USP49-203ENST00000394253 ZNF331Q9NQX6 463 aaPredicted RBP12.79□□□□□ -0.36
USP49-203ENST00000394253 SLC22A23A1A5C7 686 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 MMP20O60882 483 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 FHP07954 510 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 ERVFC1P60507 584 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 HMGCS1Q01581 520 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 LSAMPQ13449 338 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 RBMS2Q15434 407 aaKnown RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 LCLAT1Q6UWP7 414 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 OR13C5Q8NGS8 318 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 OR13C2Q8NGS9 318 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 BLNKQ8WV28 456 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 FCRL3Q96P31 734 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 EBF4Q9BQW3 602 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 THAP7Q9BT49 309 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 ADAM29Q9UKF5 820 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 COL1A2P08123 1366 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 KRBA1A5PL33 1030 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 IRF4Q15306 451 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 SGTBQ96EQ0 304 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 ZCCHC4Q9H5U6 513 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 SERTAD3Q9UJW9 196 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 NUDT19A8MXV4 375 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 CALCRP30988 508 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 RELAQ04206 551 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 LIPJQ5W064 366 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 MRPL10Q7Z7H8 261 aaKnown RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 ISYNA1Q9NPH2 558 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 MRPL15Q9P015 296 aaKnown RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 CLDN5O00501 218 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 ARL2P36404 184 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 FIBCD1Q8N539 461 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.78□□□□□ -0.36
USP49-203ENST00000394253 FAM118AQ9NWS6 357 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 WIF1Q9Y5W5 379 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 PTGER4P35408 488 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 OGFOD3Q6PK18 319 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 ENPP6Q6UWR7 440 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 LNX1Q8TBB1 728 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 MR1Q95460 341 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 MIB2Q96AX9 1013 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 ANKRD9Q96BM1 317 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 ZBTB45Q96K62 511 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 CD84Q9UIB8 345 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 CNTNAP1P78357 1384 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 ACPPP15309 386 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 CTRB1P17538 263 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 ELK1P19419 428 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 POU6F2P78424 691 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 MAP1SQ66K74 1059 aaPredicted RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 CTRB2Q6GPI1 263 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 FAM122BQ7Z309 247 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 FCRL1Q96LA6 429 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 TEPSINQ96N21 525 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 ADARB2Q9NS39 739 aaKnown RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 SLC39A9Q9NUM3 307 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 CEBPZOSA8MTT3 80 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 SYT7O43581 403 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 CAMK2BQ13554 666 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 AMZ1Q400G9 498 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 FJX1Q86VR8 437 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 TOMM40LQ969M1 308 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 SRRQ9GZT4 340 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 WDR26Q9H7D7 661 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 DUS2Q9NX74 493 aaKnown RBP12.78□□□□□ -0.36
USP49-203ENST00000394253 SLC27A5Q9Y2P5 690 aa12.78□□□□□ -0.36
USP49-203ENST00000394253 MSI1O43347 362 aaKnown RBP12.77□□□□□ -0.36
USP49-203ENST00000394253 OR5H8P0DN80 308 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 PRKACGP22612 351 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 NAA10P41227 235 aaPredicted RBP12.77□□□□□ -0.36
USP49-203ENST00000394253 HLCSP50747 726 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 PRPS1P60891 318 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 DSC2Q02487 901 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 VITQ6UXI7 678 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 LRRTM4Q86VH4 590 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 ZNF417Q8TAU3 575 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 TPPP3Q9BW30 176 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 TMEM235A6NFC5 223 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 TMEM225BP0DP42 221 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 GABRR2P28476 465 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 L1CAMP32004 1257 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 BTNL8Q6UX41 500 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 ZNF836Q6ZNA1 936 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 IRF2BP2Q7Z5L9 587 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 NPRL2Q8WTW4 380 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 ARPC5LQ9BPX5 153 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 MEIS2O14770 477 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 SFT2D3Q587I9 215 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 CD300LGQ6UXG3 332 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 HMCESQ96FZ2 354 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 PIGMQ9H3S5 423 aa12.77□□□□□ -0.36
USP49-203ENST00000394253 DPEP3Q9H4B8 488 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms