RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCDC71LQ8N9Z2 235 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 GPRC5BQ9NZH0 403 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 EMC8O43402 210 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 HCRTR2O43614 444 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 MSCO60682 206 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SOX9P48436 509 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 POU3F4P49335 361 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 TAP2Q03519 686 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 RPS26P11Q5JNZ5 115 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 CTU1Q7Z7A3 348 aaKnown RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 LRRC28Q86X40 367 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM19Q96HH6 336 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SMOC2Q9H3U7 446 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 METTL7AQ9H8H3 244 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 CBY1Q9Y3M2 126 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 ADAM10O14672 748 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 ONECUT3O60422 494 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 DNAJB6O75190 326 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 IL4RP24394 825 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 GABRB3P28472 473 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 LYPD4Q6UWN0 246 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM135Q86UB9 458 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 NRMQ8IXM6 262 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 DNAAF1Q8NEP3 725 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 FNDC9Q8TBE3 224 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 MRGPRX2Q96LB1 330 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 TMEM248Q9NWD8 314 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 TCRBV3S1A0A5B6 114 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 NDUFS1P28331 727 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 CPOQ8IVL8 374 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 PXT1Q8NFP0 134 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 NPY6RQ99463 290 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 PITHD1Q9GZP4 211 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 RNF208Q9H0X6 261 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 CSNK1G3Q9Y6M4 447 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 A0A0D9SG52 128 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 PPP1R3DO95685 299 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 C1GALT1C1LP0DN25 315 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 BPIP17213 487 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 ETV5P41161 510 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 OC90Q02509 493 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SLC10A2Q12908 348 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 NFATC2Q13469 925 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 DHCR24Q15392 516 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 ACSM3Q53FZ2 586 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 IDO2Q6ZQW0 420 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 RFPL4BQ6ZWI9 263 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 LACC1Q8IV20 430 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 GLYATL1Q969I3 302 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 L3HYPDHQ96EM0 354 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SDSLQ96GA7 329 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 FUBP3Q96I24 572 aaKnown RBP eCLIP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 LUZP4Q9P127 313 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 ABI3Q9P2A4 366 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 MYH9P35579 1960 aaKnown RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SDC3O75056 442 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SELENOWP63302 87 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SIX1Q15475 284 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 DUSP6Q16828 381 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 YIF1BQ5BJH7 314 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 SLC18B1Q6NT16 456 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 CREB3L2Q70SY1 520 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 CD163Q86VB7 1156 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 LAX1Q8IWV1 398 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 NAGSQ8N159 534 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 LRRC46Q96FV0 321 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 ZNF578Q96N58 590 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 GPR88Q9GZN0 384 aa11.25□□□□□ -0.61
SYNPO-202ENST00000394243 MARCH4Q9P2E8 410 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-202ENST00000394243 PIGBOS1A0A0B4J2F0 54 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 C7orf72A4D263 438 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 HHLA1C9JL84 531 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 NFYAP23511 347 aaPredicted RBP11.24□□□□□ -0.61
SYNPO-202ENST00000394243 SHMT2P34897 504 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 SP2Q02086 613 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 NADSYN1Q6IA69 706 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 SLC35F2Q8IXU6 374 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 OR51T1Q8NGJ9 327 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 ADAMTS16Q8TE57 1224 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 DCAF13Q9NV06 445 aaKnown RBP11.24□□□□□ -0.61
SYNPO-202ENST00000394243 DCDC2BA2VCK2 349 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 CLDN24A6NM45 220 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 EFCAB7A8K855 629 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 IVDP26440 423 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 POLR2HP52434 150 aaKnown RBP11.24□□□□□ -0.61
SYNPO-202ENST00000394243 ERVPABLB-1P60509 514 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 C18orf21Q32NC0 220 aaPredicted RBP11.24□□□□□ -0.61
SYNPO-202ENST00000394243 KCNIP4Q6PIL6 250 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 C16orf78Q8WTQ4 265 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 BORCS7Q96B45 105 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 OCSTAMPQ9BR26 566 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 CENPOQ9BU64 300 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 PTTG3PQ9NZH4 202 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 TRAPPC6AO75865 159 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 TPPPO94811 219 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 MEX3BQ6ZN04 569 aaKnown RBP11.24□□□□□ -0.61
SYNPO-202ENST00000394243 KDM1BQ8NB78 822 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 SNX18Q96RF0 628 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 SORT1Q99523 831 aa11.24□□□□□ -0.61
SYNPO-202ENST00000394243 PELOQ9BRX2 385 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms