RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CH25HO95992 272 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 GKN3PP0CG01 181 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 BMP7P18075 431 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 LSSP48449 732 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 C6orf141Q5SZD1 244 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 C8orf82Q6P1X6 216 aaPredicted RBP9.65□□□□□ -0.87
COL6A3-205ENST00000392004 GALNT7Q86SF2 657 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 ESX1Q8N693 406 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 SAP25Q8TEE9 199 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 KLHL6Q8WZ60 621 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 UCN3Q969E3 161 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 OR1F2PQ96R84 312 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 ABCB10Q9NRK6 738 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 RASSF1Q9NS23 344 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 FAM120CQ9NX05 1096 aaKnown RBP9.65□□□□□ -0.87
COL6A3-205ENST00000392004 IL20RAQ9UHF4 553 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 USP22Q9UPT9 525 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 CORO2BQ9UQ03 480 aa9.65□□□□□ -0.87
COL6A3-205ENST00000392004 PNMA8CA0A1B0GUJ8 204 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 SLC22A1O15245 554 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 FGF17O60258 216 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 MAN1A2O60476 641 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 HSD3B1P14060 373 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 HSD3B2P26439 372 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 BCL2A1Q16548 175 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 MEP1AQ16819 746 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PLEKHG7Q6ZR37 379 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF248Q8NDW4 579 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 THOC3Q96J01 351 aaKnown RBP9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PSD2Q9BQI7 771 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 WASH6PQ9NQA3 447 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ENPP5Q9UJA9 477 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 H0YIV9 168 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 BLOC1S5-TXNDC5H3BN57 136 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 SNPHO15079 494 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 EMC8O43402 210 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 P04436 131 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PCSK2P16519 638 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 DDCP20711 480 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PRKACGP22612 351 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 CRHBPP24387 322 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 CXCR1P25024 350 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PSMB9P28065 219 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 REEP5Q00765 189 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PIGFQ07326 219 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 CARTPTQ16568 116 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 SLC5A12Q1EHB4 618 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 USP51Q70EK9 711 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ZFP90Q8TF47 636 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 OR5P2Q8WZ92 322 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 HTRA1Q92743 480 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 CDS1Q92903 461 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 TOR3AQ9H497 397 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 MOV10Q9HCE1 1003 aaKnown RBP9.64□□□□□ -0.87
COL6A3-205ENST00000392004 AMBNQ9NP70 447 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 SCN3BQ9NY72 215 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 DKKL1Q9UK85 242 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 FASNP49327 2511 aaKnown RBP9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PLXNA4Q9HCM2 1894 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 A0A1W2PR77 199 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ELOA3DA6NLF2 546 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-205ENST00000392004 C11orf98E9PRG8 122 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 DNAJB5O75953 348 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 HNRNPFP52597 415 aaKnown RBP9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ELOA3BQ3SY89 546 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 BLOC1S3Q6QNY0 202 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 VTCN1Q7Z7D3 282 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 RAB43Q86YS6 212 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 SNX29P2Q8IUI4 249 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ELOA3Q8NG57 546 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 OR56A1Q8NGH5 318 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PROKR1Q8TCW9 393 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ASB12Q8WXK4 309 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ART5Q96L15 291 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 TEFMQ96QE5 360 aaKnown RBP9.64□□□□□ -0.87
COL6A3-205ENST00000392004 CD180Q99467 661 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 IER2Q9BTL4 223 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PLA2G3Q9NZ20 509 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 TNFRSF10DQ9UBN6 386 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 PRODH2Q9UF12 536 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 ACAD8Q9UKU7 415 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 CFL2Q9Y281 166 aa9.64□□□□□ -0.87
COL6A3-205ENST00000392004 CCDC187A0A096LP49 1063 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 CCDC163A0A0D9SF12 145 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TRIM64BA6NI03 449 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TTLL8A6PVC2 850 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 FGF4P08620 206 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 SLC6A12P48065 614 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 C1DQ13901 141 aaKnown RBP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 RUNX2Q13950 521 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 COQ5Q5HYK3 327 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 P4HA3Q7Z4N8 544 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 ZDHHC21Q8IVQ6 265 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 UBE2J2Q8N2K1 259 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TEX19Q8NA77 164 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 SGPP1Q9BX95 441 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 ACTL8Q9H568 366 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 PDP1Q9P0J1 537 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 PPP4R1LQ9P1A2 415 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 H3BSH0 61 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms