RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MOAP1Q96BY2 351 aa12.5□□□□□ -0.41
CCDC3-202ENST00000378839 WDR92Q96MX6 357 aa12.5□□□□□ -0.41
CCDC3-202ENST00000378839 ASPNQ9BXN1 380 aa12.5□□□□□ -0.41
CCDC3-202ENST00000378839 NDUFB11Q9NX14 153 aa12.5□□□□□ -0.41
CCDC3-202ENST00000378839 NTMQ9P121 344 aa12.5□□□□□ -0.41
CCDC3-202ENST00000378839 SLCO1B1Q9Y6L6 691 aa12.5□□□□□ -0.41
CCDC3-202ENST00000378839 LAMA1P25391 3075 aa12.5□□□□□ -0.41
CCDC3-202ENST00000378839 PNMA8CA0A1B0GUJ8 204 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SHISA7A6NL88 538 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 TAF4O00268 1085 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 CDC42EP2O14613 210 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 TNFSF14O43557 240 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ASNA1O43681 348 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 LDB3O75112 727 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SLC2A10O95528 541 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 CH25HO95992 272 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 COL4A2P08572 1712 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 GNSP15586 552 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 TPMTP51580 245 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 TPTEP56180 551 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 PLAURQ03405 335 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 PRKCDQ05655 676 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 PUS10Q3MIT2 529 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF542PQ5EBM4 170 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 PRAMEF8Q5VWM4 474 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 PRAMEF7Q5VXH5 474 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 KIAA1324Q6UXG2 1013 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF836Q6ZNA1 936 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 MTSS1LQ765P7 747 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 GDF7Q7Z4P5 450 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF438Q7Z4V0 828 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 CCDC190Q86UF4 302 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SIX5Q8N196 739 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 OR2L13Q8N349 312 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 LRRC25Q8N386 305 aaPredicted RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 POGLUT1Q8NBL1 392 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SRFBP1Q8NEF9 429 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 PROKR2Q8NFJ6 384 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 TMEM203Q969S6 136 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 MND1Q9BWT6 205 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 POLR2J2Q9GZM3 115 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 C3orf14Q9HBI5 128 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 LYARQ9NX58 379 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 DAPP1Q9UN19 280 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 DIMT1Q9UNQ2 313 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 NPIPA5A0A0B4J1W7 369 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 NPIPA7E9PJI5 369 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SYT5O00445 386 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 KLF4O43474 513 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 CLEC2LP0C7M8 214 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 NPIPA8P0DM63 369 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 CPN2P22792 545 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 FHL5Q5TD97 284 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 AGAP7PQ5VUJ5 663 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 RNLSQ5VYX0 342 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SDE2Q6IQ49 451 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SLC30A6Q6NXT4 461 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 WDR88Q6ZMY6 472 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 C16orf62Q7Z3J2 963 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF761Q86XN6 746 aaPredicted RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 BBS1Q8NFJ9 593 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 C17orf50Q8WW18 174 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 FAM3CQ92520 227 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 EXOSC4Q9NPD3 245 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 STARD5Q9NSY2 213 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 LRP4O75096 1905 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 GSAPA4D1B5 854 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 UBXN7O94888 489 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF136P52737 540 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SRP54P61011 504 aaKnown RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ZMAT1Q5H9K5 638 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 TMEM163Q8TC26 289 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 SLX1AQ9BQ83 275 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ENKD1Q9H0I2 346 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ACTR10Q9NZ32 417 aa12.49□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF443Q9Y2A4 671 aaPredicted RBP12.49□□□□□ -0.41
CCDC3-202ENST00000378839 LALBAP00709 142 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 MSL3P1P0C860 447 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 TSPAN31Q12999 210 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 FAM214AQ32MH5 1076 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF628Q5EBL2 1059 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 CDC73Q6P1J9 531 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 FIGLAQ6QHK4 219 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF730Q6ZMV8 503 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 DGAT2L6Q6ZPD8 337 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ADAMTS15Q8TE58 950 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ZFPM2Q8WW38 1151 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 GATAD2BQ8WXI9 593 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ASB12Q8WXK4 309 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 PIK3R3Q92569 461 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 DCLRE1CQ96SD1 692 aaKnown RBP12.48□□□□□ -0.41
CCDC3-202ENST00000378839 C14orf119Q9NWQ9 140 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ERVK13-1Q9NX77 482 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 PCDHGB6Q9Y5F9 930 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 A0A0C4DFX4 3053 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 FGF17O60258 216 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 CT62P0C5K7 136 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 HTR2AP28223 471 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 PRKAR1BP31321 381 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 LTBRP36941 435 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms