RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PEX2P28328 305 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 WNT5AP41221 380 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PRKCIP41743 596 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MLLT10P55197 1068 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 C21orf58P58505 322 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 VAMP3Q15836 100 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RHBDF2Q6PJF5 856 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 GSG1LQ6UXU4 331 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF573Q86YE8 665 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 GCNT2Q8N0V5 402 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OR7G3Q8NG95 312 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OR2T6Q8NHC8 308 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 POM121Q96HA1 1249 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 FBXL20Q96IG2 436 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MAELQ96JY0 434 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CCDC32Q9BV29 185 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 KIAA1683Q9H0B3 1180 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TRAV39A0A0B4J263 110 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TREHO43280 583 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 DCNP07585 359 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OR8U8P0C7N1 319 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 STK19P49842 368 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 XKP51811 444 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 NUDT6P53370 316 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TPPP2P59282 170 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 IRF4Q15306 451 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 LRRC18Q8N456 261 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CMASQ8NFW8 434 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OR6M1Q8NGM8 313 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OR1J1Q8NGS3 322 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RHOXF1Q8NHV9 184 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PIWIL2Q8TC59 973 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 AGAP11Q8TF27 550 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RAB8BQ92930 207 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PDLIM2Q96JY6 352 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CDK15Q96Q40 435 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 STACQ99469 402 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 HERC2P3Q9BVR0 1158 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SLC25A32Q9H2D1 315 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TMPRSS5Q9H3S3 457 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MOV10Q9HCE1 1003 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RNF150Q9ULK6 438 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 POLDIP2Q9Y2S7 368 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 FBXO7Q9Y3I1 522 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CASZ1Q86V15 1759 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 G3V3Y1 287 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CD46P15529 392 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CORO1AP31146 461 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SOX3P41225 446 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SLC25A3Q00325 362 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 LAMTOR4Q0VGL1 99 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TESK1Q15569 626 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 LCN10Q6JVE6 187 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 C17orf107Q6ZR85 190 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ALYREFQ86V81 257 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 LMNTD1Q8N9Z9 388 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SUMF2Q8NBJ7 301 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF431Q8TF32 576 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 NUS1Q96E22 293 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PGM2Q96G03 612 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PACRGQ96M98 296 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CD180Q99467 661 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 C11orf84Q9BUA3 381 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 NTMT1Q9BV86 223 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MROQ9BYG7 248 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 LRTM1Q9HBL6 345 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 HES4Q9HCC6 221 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ATG4BQ9Y4P1 393 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 A0A0B4J203 849 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RPP40O75818 363 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TOXO94900 526 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OLFM2O95897 454 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TGFB1P01137 390 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 POU3F2P20265 443 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CPT2P23786 658 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 EEFSECP57772 596 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 FPGSQ05932 587 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CAPSQ13938 189 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 NSDHLQ15738 373 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SLC35E4Q6ICL7 350 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 STEAP1BQ6NZ63 245 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 GOLGA7Q7Z5G4 137 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PYROXD2Q8N2H3 581 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SLC37A3Q8NCC5 494 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF417Q8TAU3 575 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ZDHHC1Q8WTX9 485 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 HTR3CQ8WXA8 447 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 NTAN1Q96AB6 310 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ATG4CQ96DT6 458 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TVP23CQ96ET8 276 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF587Q96SQ5 575 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MFRPQ9BY79 579 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 POTEKPQ9BYX7 375 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TCEAL2Q9H3H9 227 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TUBA4BQ9H853 241 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ATP13A2Q9NQ11 1180 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 EXTL2Q9UBQ6 330 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 GIMAP2Q9UG22 337 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 EVLQ9UI08 416 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TRAPPC2LQ9UL33 140 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms