RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 OR9A2Q8NGT5 310 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 OR4Q3Q8NH05 313 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 ADAMTS15Q8TE58 950 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 FGF13Q92913 245 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 GIMAP5Q96F15 307 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 SLC41A3Q96GZ6 507 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 MS4A4EQ96PG1 132 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 MCHR1Q99705 422 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 TM9SF2Q99805 663 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 TRMT61BQ9BVS5 477 aaKnown RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 C1QTNF7Q9BXJ2 289 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 QRSL1Q9H0R6 528 aaKnown RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 C11orf54Q9H0W9 315 aaPredicted RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 DDX28Q9NUL7 540 aaKnown RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 TOR4AQ9NXH8 423 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 ZNF232Q9UNY5 417 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 GPR52Q9Y2T5 361 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 GPR55Q9Y2T6 319 aaPredicted RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 YARS2Q9Y2Z4 477 aaKnown RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 COLEC10Q9Y6Z7 277 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 CENPXA8MT69 81 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 CASKO14936 926 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 NDUFS1P28331 727 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 GJA4P35212 333 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 RPS15AP62244 130 aaKnown RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 RGS1Q08116 209 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 RIN1Q13671 783 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 TAB1Q15750 504 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 TYW3Q6IPR3 259 aaKnown RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 MFSD12Q6NUT3 480 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 MTSS1LQ765P7 747 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 GDF7Q7Z4P5 450 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 GID4Q8IVV7 300 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 C12orf76Q8N812 135 aaPredicted RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 OR2T33Q8NG76 320 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 NT5CQ8TCD5 201 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 SCARF2Q96GP6 870 aaPredicted RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 ZC3HAV1LQ96H79 300 aaKnown RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 MACROD1Q9BQ69 325 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 EQTNQ9NQ60 294 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 OR6C2Q9NZP2 312 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 ADAM30Q9UKF2 790 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 ZNF443Q9Y2A4 671 aaPredicted RBP13.37□□□□□ -0.27
CD48-201ENST00000368045 CHST2Q9Y4C5 530 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 PCDHGB7Q9Y5F8 929 aa13.37□□□□□ -0.27
CD48-201ENST00000368045 ANTXRLA6NF34 631 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 OR52A4PA6NMU1 304 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 APOL3O95236 402 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 PAK4O96013 591 aaPredicted RBP13.36□□□□□ -0.27
CD48-201ENST00000368045 STATHP02808 62 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 APODP05090 189 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 NDUFV2P19404 249 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 FCARP24071 287 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 TRHRP34981 398 aaPredicted RBP13.36□□□□□ -0.27
CD48-201ENST00000368045 PTGER1P34995 402 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 MLLT3P42568 568 aaPredicted RBP13.36□□□□□ -0.27
CD48-201ENST00000368045 AVPR1BP47901 424 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 RAB8AP61006 207 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 MAP4K2Q12851 820 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 ZNF155Q12901 538 aaPredicted RBP13.36□□□□□ -0.27
CD48-201ENST00000368045 TJAP1Q5JTD0 557 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 CLEC12AQ5QGZ9 265 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 ZNF362Q5T0B9 420 aaPredicted RBP13.36□□□□□ -0.27
CD48-201ENST00000368045 ZNF776Q68DI1 518 aaPredicted RBP13.36□□□□□ -0.27
CD48-201ENST00000368045 VITQ6UXI7 678 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 PAQR7Q86WK9 346 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 PEX5LQ8IYB4 626 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 LRRC25Q8N386 305 aaPredicted RBP13.36□□□□□ -0.27
CD48-201ENST00000368045 TMEM145Q8NBT3 493 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 SLC7A6Q92536 515 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 SLC35A4Q96G79 324 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 C10orf90Q96M02 699 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 FRMD6Q96NE9 622 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 RNF121Q9H920 327 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 SPHK1Q9NYA1 384 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 SERGEFQ9UGK8 458 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 PHF11Q9UIL8 331 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 GPSM3Q9Y4H4 160 aa13.36□□□□□ -0.27
CD48-201ENST00000368045 PDE4DIPQ5VU43 2346 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 A0A1W2PP55 124 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 B4DXG7 233 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 FRS3O43559 492 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 RNGTTO60942 597 aaKnown RBP13.35□□□□□ -0.27
CD48-201ENST00000368045 TRIM3O75382 744 aaPredicted RBP13.35□□□□□ -0.27
CD48-201ENST00000368045 ZIC2O95409 532 aaPredicted RBP13.35□□□□□ -0.27
CD48-201ENST00000368045 THBS1P07996 1170 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 HOXB3P14651 431 aaPredicted RBP13.35□□□□□ -0.27
CD48-201ENST00000368045 MYL9P24844 172 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 HLA-DMAP28067 261 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 PDX1P52945 283 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 BTN3A2P78410 334 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 MLLT1Q03111 559 aaPredicted RBP13.35□□□□□ -0.27
CD48-201ENST00000368045 QPRTQ15274 297 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 ARHGAP11BQ3KRB8 267 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 PUS10Q3MIT2 529 aaKnown RBP13.35□□□□□ -0.27
CD48-201ENST00000368045 TBRG1Q3YBR2 411 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 C6orf132Q5T0Z8 1188 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 MZT2BQ6NZ67 158 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 FRRS1Q6ZNA5 592 aa13.35□□□□□ -0.27
CD48-201ENST00000368045 LHFPL3Q86UP9 236 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms