RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 OR2G6Q5TZ20 316 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 METTL2BQ6P1Q9 378 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 CEP68Q76N32 757 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 DPH7Q9BTV6 452 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 DPH1Q9BZG8 443 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 CLMPQ9H6B4 373 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 RBFOX1Q9NWB1 397 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 KLK4Q9Y5K2 254 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 INSL5Q9Y5Q6 135 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 SMCO3A2RU48 225 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ACOT7O00154 380 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 CA12O43570 354 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF16P17020 682 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 IGFBP4P22692 258 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 KIAA1211LQ6NV74 962 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 LRRC28Q86X40 367 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 IFNL1Q8IU54 200 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ELP5Q8TE02 316 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ADAMTS16Q8TE57 1224 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 EIF3FO00303 357 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 DAPP51397 102 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 OR14K1Q8NGZ2 314 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 ZMYND19Q96E35 227 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 SAP130Q9H0E3 1048 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 MYH1P12882 1939 aa18.49■□□□□ 0.55
CCDC88B-202ENST00000356786 IGKV6D-21A0A0A0MT36 114 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 PROS1P07225 676 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 DCNP07585 359 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 LUMP51884 338 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 GHRHRQ02643 423 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF33BQ06732 778 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 TRNP1Q6NT89 227 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 C1orf94Q6P1W5 598 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 FAM122CQ6P4D5 195 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC46A3Q7Z3Q1 461 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 REM2Q8IYK8 340 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 ARID1BQ8NFD5 2236 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 FAM46BQ96A09 425 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 METTL17Q9H7H0 456 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 DDX31Q9H8H2 851 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 LEFTY2O00292 366 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 RNASET2O00584 256 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 IQCF3P0C7M6 154 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 POLR2CP19387 275 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 SPINT3P49223 89 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF792Q3KQV3 632 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 ALG10BQ5I7T1 473 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 OR4N5Q8IXE1 308 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 CAPNS2Q96L46 248 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 PHB2Q99623 299 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 HIF3AQ9Y2N7 669 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 AP1M2Q9Y6Q5 423 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 APEX1P27695 318 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 AMZ1Q400G9 498 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 PDZD3Q86UT5 571 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 CELF5Q8N6W0 485 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 SMARCD2Q92925 531 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 NTMT1Q9BV86 223 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 MAN2C1Q9NTJ4 1040 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 FBXL12Q9NXK8 326 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 USP54Q70EL1 1684 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 GABRR3A8MPY1 467 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 FABP7O15540 132 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 ZNF254O75437 659 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 PDGFAP04085 211 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 OXA1LQ15070 435 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 ARHGAP12Q8IWW6 846 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 UBXN10Q96LJ8 280 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC28A3Q9HAS3 691 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 RPS10P5Q9NQ39 176 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 PTTG3PQ9NZH4 202 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 NPAP1Q9NZP6 1156 aa18.48■□□□□ 0.55
CCDC88B-202ENST00000356786 B4DGG1 531 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 SNAI1O95863 264 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 JUNBP17275 347 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 CYCSP99999 105 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 FAPQ12884 760 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 AAK1Q2M2I8 961 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 LEXMQ3ZCV2 418 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 FCRLBQ6BAA4 426 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 OR5AK2Q8NH90 309 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 DCUN1D4Q92564 292 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 TMEM175Q9BSA9 504 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ARNT2Q9HBZ2 717 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 CXXC1Q9P0U4 656 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 NAV1Q8NEY1 1877 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 UNCXA6NJT0 531 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ANKRD28O15084 1053 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 CACNG3O60359 315 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 RIDAP52758 137 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 ALKAL2Q6UX46 152 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 SLC16A9Q7RTY1 509 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 HMGB4Q8WW32 186 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 UNKLQ9H9P5 680 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 NOX3Q9HBY0 568 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 PSORS1C1Q9UIG5 152 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 A0A1B0GTW7 788 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 PTGESO14684 152 aa18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 CDC123O75794 336 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-202ENST00000356786 PPP1R3DO95685 299 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms