RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 GXYLT2A0PJZ3 443 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 FADS1O60427 444 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 EPPINO95925 133 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 DHRS4L1P0CG22 281 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 PRPS2P11908 318 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 GRK2P25098 689 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 GABRA3P34903 492 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 EVI2BP34910 448 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 GPC1P35052 558 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 MAP3K8P41279 467 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 PTGR1Q14914 329 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 CHI3L2Q15782 390 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 ATP6AP1LQ52LC2 224 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 MEX3BQ6ZN04 569 aaKnown RBP16.72■□□□□ 0.27
CLN3-202ENST00000355477 OR7A2PQ8NGA2 310 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 PPP1R14CQ8TAE6 165 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 MTERF3Q96E29 417 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 ZBED6CLQ96FA7 236 aaPredicted RBP16.72■□□□□ 0.27
CLN3-202ENST00000355477 RTN4RQ9BZR6 473 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 OR2B2Q9GZK3 357 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 ATP6V1HQ9UI12 483 aa16.72■□□□□ 0.27
CLN3-202ENST00000355477 ANKRD17O75179 2603 aaKnown RBP16.72■□□□□ 0.27
CLN3-202ENST00000355477 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 TMEM114B3SHH9 223 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 BIRC5O15392 142 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 HSPA4LO95757 839 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 IL33O95760 270 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 IGKV1D-16P01601 117 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 SERPINE1P05121 402 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 LAMP1P11279 417 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 IGFBP2P18065 325 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 PRKAG1P54619 331 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 MRPS22P82650 360 aaKnown RBP16.71■□□□□ 0.27
CLN3-202ENST00000355477 ZNHIT3Q15649 155 aaPredicted RBP16.71■□□□□ 0.27
CLN3-202ENST00000355477 DECR1Q16698 335 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 RIPPLY2Q5TAB7 128 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 IL23RQ5VWK5 629 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 GDF7Q7Z4P5 450 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 PM20D2Q8IYS1 436 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 ZNF781Q8N8C0 355 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 NAXEQ8NCW5 288 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 NUP43Q8NFH3 380 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 TNIP2Q8NFZ5 429 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 OR14L1PQ8NHC6 308 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 ZFP28Q8NHY6 868 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 PIK3R3Q92569 461 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 HOXB13Q92826 284 aaPredicted RBP16.71■□□□□ 0.27
CLN3-202ENST00000355477 GIMAP5Q96F15 307 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 Q9N2J8 555 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 ACSS1Q9NUB1 689 aaPredicted RBP16.71■□□□□ 0.27
CLN3-202ENST00000355477 TAS2R10Q9NYW0 307 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 NTMQ9P121 344 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 OTOGQ6ZRI0 2925 aa16.71■□□□□ 0.27
CLN3-202ENST00000355477 SCAMP2O15127 329 aaKnown RBP16.7■□□□□ 0.26
CLN3-202ENST00000355477 TM9SF1O15321 606 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 SCO2O43819 266 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 ZIC3O60481 467 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 ACTL6AO96019 429 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 TUBBP07437 444 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 MSX1P28360 303 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 MAPK1P28482 360 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 SRD5A2P31213 254 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 HPCAL1P37235 193 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 RFX3P48380 749 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 ABCE1P61221 599 aaKnown RBP16.7■□□□□ 0.26
CLN3-202ENST00000355477 LRIG3Q6UXM1 1119 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 R3HCC1LQ7Z5L2 792 aaKnown RBP16.7■□□□□ 0.26
CLN3-202ENST00000355477 TRIM42Q8IWZ5 723 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 KRTCAP2Q8N6L1 136 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 FNDC5Q8NAU1 212 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 CEP70Q8NHQ1 597 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 TUBGCP3Q96CW5 907 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 KCNK9Q9NPC2 374 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 SIRT3Q9NTG7 399 aaPredicted RBP16.7■□□□□ 0.26
CLN3-202ENST00000355477 CCDC168Q8NDH2 2452 aa16.7■□□□□ 0.26
CLN3-202ENST00000355477 MPDZO75970 2070 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 ANKHD1Q8IWZ3 2542 aaKnown RBP16.69■□□□□ 0.26
CLN3-202ENST00000355477 SPG11Q96JI7 2443 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 EMC8O43402 210 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 NKX2-2O95096 273 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 ACP2P11117 423 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 BGNP21810 368 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 CEACAM8P31997 349 aaPredicted RBP16.69■□□□□ 0.26
CLN3-202ENST00000355477 GFRA1P56159 465 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 FADS6Q8N9I5 356 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 FBXO30Q8TB52 745 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 GPR151Q8TDV0 419 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 PGM2Q96G03 612 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 RMND5BQ96G75 393 aaPredicted RBP16.69■□□□□ 0.26
CLN3-202ENST00000355477 C16orf58Q96GQ5 468 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 PPP1R36Q96LQ0 422 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 SORT1Q99523 831 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 DSN1Q9H410 356 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 C3orf14Q9HBI5 128 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 MRPS18CQ9Y3D5 142 aaKnown RBP16.69■□□□□ 0.26
CLN3-202ENST00000355477 ACTL7BQ9Y614 415 aa16.69■□□□□ 0.26
CLN3-202ENST00000355477 TTC36A6NLP5 189 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 HSPB2A8KAH6 182 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 FAM47E-STBD1D6RA91 191 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 ZWINTO95229 277 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms