RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 IL33O95760 270 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 CRATP43155 626 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 KHKP50053 298 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 PNLIPRP2P54317 469 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 KLRB1Q12918 225 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 BICRALQ6AI39 1079 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 OLIG3Q7RTU3 272 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 NUP54Q7Z3B4 507 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 GALNTL5Q7Z4T8 443 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 C10orf111Q8N326 155 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 OR52N2Q8NGI0 321 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 DEPPQ9NTK1 212 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 RYDENQ9NUL5 291 aaKnown RBP20.35■□□□□ 0.85
SHMT1-203ENST00000354098 FLRT3Q9NZU0 649 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 SMG1Q96Q15 3661 aaKnown RBP20.35■□□□□ 0.85
SHMT1-203ENST00000354098 PRAMEF27A3QJZ7 478 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 FXYD1O00168 92 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 TP53I11O14683 189 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 AIM2O14862 343 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 NME2P1O60361 137 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 CYP4B1P13584 511 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 NME2P22392 152 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 GPR85P60893 370 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 SELPLGQ14242 412 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 RGNQ15493 299 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 TRMT5Q32P41 509 aaKnown RBP20.35■□□□□ 0.85
SHMT1-203ENST00000354098 DCST2Q5T1A1 773 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 PRAMEF20Q5VT98 475 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 SLC22A10Q63ZE4 541 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 SPPL2AQ8TCT8 520 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 LRRC58Q96CX6 371 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 CMTM5Q96DZ9 223 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 ANKRD27Q96NW4 1050 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 CPPED1Q9BRF8 314 aaPredicted RBP20.35■□□□□ 0.85
SHMT1-203ENST00000354098 ARL8BQ9NVJ2 186 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 MRTO4Q9UKD2 239 aaKnown RBP20.35■□□□□ 0.85
SHMT1-203ENST00000354098 PCDHGB3Q9Y5G1 929 aa20.35■□□□□ 0.85
SHMT1-203ENST00000354098 A0A0G2JMM0 328 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 A0A1W2PPB8 328 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 A0A1W2PRS3 328 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 KIR3DP1A8MWS1 328 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 ASNA1O43681 348 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 FUT5Q11128 374 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 SDF2Q99470 211 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 PROK2Q9HC23 129 aa20.34■□□□□ 0.85
SHMT1-203ENST00000354098 CNOT11Q9UKZ1 510 aaKnown RBP20.34■□□□□ 0.85
SHMT1-203ENST00000354098 EXPH5Q8NEV8 1989 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 ABCB7O75027 752 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 ICOSLGO75144 302 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 SOX30O94993 753 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 PRB1P04280 392 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 NUDT7P0C024 238 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 PRDX6P30041 224 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 MTPNP58546 118 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 SOWAHCQ53LP3 525 aaPredicted RBP20.33■□□□□ 0.85
SHMT1-203ENST00000354098 FAM91A1Q658Y4 838 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 HEPHL1Q6MZM0 1159 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 SULF2Q8IWU5 870 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 PCYOX1LQ8NBM8 494 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 CHDHQ8NE62 594 aaPredicted RBP20.33■□□□□ 0.85
SHMT1-203ENST00000354098 SACM1LQ9NTJ5 587 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 EXD2Q9NVH0 621 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 GMEB1Q9Y692 573 aa20.33■□□□□ 0.85
SHMT1-203ENST00000354098 FCMRO60667 390 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 P04436 131 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 CASP3P42574 277 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 CPA2P48052 419 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 PSMD4P55036 377 aaKnown RBP20.32■□□□□ 0.84
SHMT1-203ENST00000354098 EFR3AQ14156 821 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 SYPL1Q16563 259 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 CPEB4Q17RY0 729 aaKnown RBP eCLIP20.32■□□□□ 0.84
SHMT1-203ENST00000354098 ARHGAP11BQ3KRB8 267 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 NANOGP8Q6NSW7 305 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 C16orf62Q7Z3J2 963 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 FBXW8Q8N3Y1 598 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 TMEM178AQ8NBL3 297 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 GRHL3Q8TE85 626 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 TMCO6Q96DC7 493 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 NANOGQ9H9S0 305 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 CNIH4Q9P003 139 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 PCDHGB6Q9Y5F9 930 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 PCDHGA10Q9Y5H3 936 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 PINLYPA6NC86 204 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 PEX1O43933 1283 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 UTS2O95399 124 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 AGR2O95994 175 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 GPX2P18283 190 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 CNR1P21554 472 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 PPIBP23284 216 aaKnown RBP20.32■□□□□ 0.84
SHMT1-203ENST00000354098 DNASE1L1P49184 302 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 DSTNP60981 165 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 ATAD3BQ5T9A4 648 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 PNPLA5Q7Z6Z6 429 aaPredicted RBP20.32■□□□□ 0.84
SHMT1-203ENST00000354098 ANKFN1Q8N957 763 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 OR4C3Q8NH37 302 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 SECISBP2Q96T21 854 aaKnown RBP20.32■□□□□ 0.84
SHMT1-203ENST00000354098 G6PC3Q9BUM1 346 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 THUMPD3Q9BV44 507 aaKnown RBP20.32■□□□□ 0.84
SHMT1-203ENST00000354098 EFCAB1Q9HAE3 211 aa20.32■□□□□ 0.84
SHMT1-203ENST00000354098 KLF13Q9Y2Y9 288 aaPredicted RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms