RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 GATAD2BQ8WXI9 593 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 CST11Q9H112 138 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 P2RY12Q9H244 342 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 LIN28AQ9H9Z2 209 aaKnown RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 DCAF13Q9NV06 445 aaKnown RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 CBLCQ9ULV8 474 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 POM121BA6NF01 834 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 ITGB8P26012 769 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 REEP5Q00765 189 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 MRPL49Q13405 166 aaKnown RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 ALDH16A1Q8IZ83 802 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 C12orf43Q96C57 262 aaKnown RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 CPNE2Q96FN4 548 aaPredicted RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 ADAM29Q9UKF5 820 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 TMEM14AQ9Y6G1 99 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 CDH10Q9Y6N8 788 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 NSG1A0A0A6YYJ2 146 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 ITIH1P19827 911 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 CNR2P34972 360 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 RAB38P57729 211 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 HYAL1Q12794 435 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 OGFRL1Q5TC84 451 aaPredicted RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 UEVLDQ8IX04 471 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 OR5B2Q96R09 309 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 CNN2Q99439 309 aaKnown RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 SLAMF8Q9P0V8 285 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 DHCR7Q9UBM7 475 aaKnown RBP14.03□□□□□ -0.16
COL17A1-201ENST00000353479 SEC14L4Q9UDX3 406 aa14.03□□□□□ -0.16
COL17A1-201ENST00000353479 PRAMEF33A0A0G2JMD5 474 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 FLRT2O43155 660 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 PRAMEF10O60809 474 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 MT-ND2P03891 347 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 ZNF43P17038 809 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 SLC6A8P48029 635 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 CAPZA1P52907 286 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 SELENOVP59797 346 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TUBA1BP68363 451 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 HSD11B2P80365 405 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TNFRSF17Q02223 184 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TLE3Q04726 772 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 SLC5A12Q1EHB4 618 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 ABCA11PQ4W5N1 156 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 DCAF12Q5T6F0 453 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TUBA1AQ71U36 451 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 CCDC80Q76M96 950 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 METTL25Q8N6Q8 603 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 GTF2H4Q92759 462 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 ZNF300Q96RE9 604 aaPredicted RBP14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TEX10Q9NXF1 929 aaPredicted RBP14.02□□□□□ -0.16
COL17A1-201ENST00000353479 GRIP1Q9Y3R0 1128 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 GJE1A6NN92 205 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 JRKO75564 520 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 OR1D5P58170 312 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 APOFQ13790 326 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 CBFBQ13951 182 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TNFAIP8L3Q5GJ75 292 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TMEM207Q6UWW9 146 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 TMPPEQ6ZT21 453 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 L3MBTL4Q8NA19 623 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 ARMC1Q9NVT9 282 aa14.02□□□□□ -0.16
COL17A1-201ENST00000353479 USP36Q9P275 1121 aaKnown RBP14.02□□□□□ -0.16
COL17A1-201ENST00000353479 BLACEA4D250 179 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 CASC3O15234 703 aaKnown RBP14.02□□□□□ -0.17
COL17A1-201ENST00000353479 ORC5O43913 435 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 KDM4BO94953 1096 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 OSMP13725 252 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 SYPL1Q16563 259 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 SPRED3Q2MJR0 410 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 MEX3DQ86XN8 651 aaKnown RBP14.02□□□□□ -0.17
COL17A1-201ENST00000353479 DNAJA4Q8WW22 397 aaPredicted RBP14.02□□□□□ -0.17
COL17A1-201ENST00000353479 TMEM41AQ96HV5 264 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 YBX2Q9Y2T7 364 aaKnown RBP14.02□□□□□ -0.17
COL17A1-201ENST00000353479 ACVR1BP36896 505 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 PFN3P60673 137 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 POU4F2Q12837 409 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 PRAMEF8Q5VWM4 474 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 PRAMEF7Q5VXH5 474 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 METRNLQ641Q3 311 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 KLBQ86Z14 1044 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 HS3ST5Q8IZT8 346 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 GALNT15Q8N3T1 639 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 WDR83Q9BRX9 315 aaKnown RBP14.02□□□□□ -0.17
COL17A1-201ENST00000353479 ZNF595Q8IYB9 648 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 TOMM5Q8N4H5 51 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 SLC37A2Q8TED4 501 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 PGAM5Q96HS1 289 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 MRGPRX1Q96LB2 322 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 DHRS1Q96LJ7 313 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 PITX2Q99697 317 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 SEMA6CQ9H3T2 930 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 FGF21Q9NSA1 209 aa14.02□□□□□ -0.17
COL17A1-201ENST00000353479 DCKP27707 260 aa14.01□□□□□ -0.17
COL17A1-201ENST00000353479 TUBA3CQ13748 450 aa14.01□□□□□ -0.17
COL17A1-201ENST00000353479 SCGB2B2Q4G0G5 96 aa14.01□□□□□ -0.17
COL17A1-201ENST00000353479 ZNF782Q6ZMW2 699 aaPredicted RBP14.01□□□□□ -0.17
COL17A1-201ENST00000353479 VRK2Q86Y07 508 aa14.01□□□□□ -0.17
COL17A1-201ENST00000353479 CCDC54Q8NEL0 328 aa14.01□□□□□ -0.17
COL17A1-201ENST00000353479 OR2T4Q8NH00 348 aa14.01□□□□□ -0.17
COL17A1-201ENST00000353479 MKRN2Q9H000 416 aaKnown RBP14.01□□□□□ -0.17
COL17A1-201ENST00000353479 SATB2Q9UPW6 733 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms