RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 MYO15AQ9UKN7 3530 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 LDB3O75112 727 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 DLGAP3O95886 979 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 HNRNPA2B1P22626 353 aaKnown RBP18.09■□□□□ 0.49
COL9A3-201ENST00000343916 GPR4P46093 362 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 OMPP47874 163 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 TPMTP51580 245 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 NKX2-5P52952 324 aaPredicted RBP18.09■□□□□ 0.49
COL9A3-201ENST00000343916 SRP54P61011 504 aaKnown RBP18.09■□□□□ 0.49
COL9A3-201ENST00000343916 PRKCDQ05655 676 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 ST3GAL3Q11203 375 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 TRAM2Q15035 370 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 DUSP5Q16690 384 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 ALG11Q2TAA5 492 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 FLYWCH1Q4VC44 716 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 SLC30A6Q6NXT4 461 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 TUBA3EQ6PEY2 450 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 FIGLAQ6QHK4 219 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 PHC2Q8IXK0 858 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 POC5Q8NA72 575 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 TM4SF19Q96DZ7 209 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 BARHL1Q9BZE3 327 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 TPK1Q9H3S4 243 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 CALML5Q9NZT1 146 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 DIMT1Q9UNQ2 313 aaKnown RBP18.09■□□□□ 0.49
COL9A3-201ENST00000343916 PEX16Q9Y5Y5 336 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 VCANP13611 3396 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 PIP5K1CO60331 668 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 RAB36O95755 333 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 ZNF45Q02386 682 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 C1DQ13901 141 aaKnown RBP18.09■□□□□ 0.49
COL9A3-201ENST00000343916 KIR2DS3Q14952 304 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 PLEKHM3Q6ZWE6 761 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 TMEM255BQ8WV15 326 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 MCHR1Q99705 422 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 NDUFB11Q9NX14 153 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 ACTR10Q9NZ32 417 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 SCML1Q9UN30 329 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 WDR45Q9Y484 360 aa18.09■□□□□ 0.49
COL9A3-201ENST00000343916 HOXC4P09017 264 aaPredicted RBP18.08■□□□□ 0.49
COL9A3-201ENST00000343916 GNSP15586 552 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 SPNP16150 400 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 TSPAN31Q12999 210 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 PUS10Q3MIT2 529 aaKnown RBP18.08■□□□□ 0.49
COL9A3-201ENST00000343916 TYW3Q6IPR3 259 aaKnown RBP18.08■□□□□ 0.49
COL9A3-201ENST00000343916 HEPHL1Q6MZM0 1159 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 NRMQ8IXM6 262 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 TMEM163Q8TC26 289 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 GNPDA2Q8TDQ7 276 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 SERINC2Q96SA4 455 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 FBRSQ9HAH7 460 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 SNTG1Q9NSN8 517 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 EVA1BQ9NVM1 165 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 PIAS3Q9Y6X2 628 aa18.08■□□□□ 0.49
COL9A3-201ENST00000343916 AP3D1O14617 1153 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 B3GALT2O43825 422 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 UBXN7O94888 489 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 MED26O95402 600 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 SMIM10L1P0DMW3 83 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 PRKAR1BP31321 381 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 LSSP48449 732 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 GAS1P54826 345 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 MXD1Q05195 221 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 GPR68Q15743 365 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF181Q2M3W8 571 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF542PQ5EBM4 170 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 SLC25A30Q5SVS4 291 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 CDC73Q6P1J9 531 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 TRIM48Q8IWZ4 208 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 OR2L13Q8N349 312 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 OR5T3Q8NGG3 340 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 RPLP0P6Q8NHW5 317 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 FAM3CQ92520 227 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 RNFT2Q96EX2 444 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 SMIM10Q96HG1 83 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 TCEAL2Q9H3H9 227 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-201ENST00000343916 ADAP2Q9NPF8 381 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 KLHL28Q9NXS3 571 aa18.08■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF443Q9Y2A4 671 aaPredicted RBP18.08■□□□□ 0.48
COL9A3-201ENST00000343916 YARS2Q9Y2Z4 477 aaKnown RBP18.08■□□□□ 0.48
COL9A3-201ENST00000343916 SAGE2PA6NJ88 616 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 DUXAA6NLW8 204 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 RGS5O15539 181 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 KCNK2O95069 426 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 APBB3O95704 486 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ENDOUP21128 410 aaKnown RBP18.07■□□□□ 0.48
COL9A3-201ENST00000343916 MLLT11Q13015 90 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-201ENST00000343916 HTR4Q13639 388 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 SPANXN2Q5MJ10 180 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 GDF7Q7Z4P5 450 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF761Q86XN6 746 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ASB12Q8WXK4 309 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ARSGQ96EG1 525 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 PHF11Q9UIL8 331 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 MSRAQ9UJ68 235 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 STUB1Q9UNE7 303 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 PCDHGB6Q9Y5F9 930 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 PLD2O14939 933 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ACP2P11117 423 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ADAM15Q13444 863 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms