RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 APIPQ96GX9 242 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ZNF486Q96H40 463 aaPredicted RBP11.96□□□□□ -0.49
SDC3-201ENST00000336798 ASF1BQ9NVP2 202 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 CDC14CA4D256 554 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 SDHDO14521 159 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 RHCEP18577 417 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ERP29P30040 261 aaKnown RBP11.96□□□□□ -0.49
SDC3-201ENST00000336798 EVI2BP34910 448 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 CX3CR1P49238 355 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 RNASE10Q5GAN6 216 aaKnown RBP11.96□□□□□ -0.49
SDC3-201ENST00000336798 AKR1C8PQ5T2L2 129 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 RPL13AP3Q6NVV1 102 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 TTC9BQ8N6N2 239 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 OR1S1Q8NH92 325 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ZUFSPQ96AP4 578 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ZNF775Q96BV0 537 aaPredicted RBP11.96□□□□□ -0.49
SDC3-201ENST00000336798 ECHDC3Q96DC8 303 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 MGLLQ99685 303 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 ABCG5Q9H222 651 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 TUBG2Q9NRH3 451 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 HCFC1R1Q9NWW0 138 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 STUB1Q9UNE7 303 aa11.96□□□□□ -0.49
SDC3-201ENST00000336798 SLC22A31A6NKX4 558 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 OIP5O43482 229 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 PROS1P07225 676 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 ERV3-1Q14264 604 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 SERPINA12Q8IW75 414 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 SLC35F2Q8IXU6 374 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 SDR9C7Q8NEX9 313 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 SENP5Q96HI0 755 aaPredicted RBP11.96□□□□□ -0.5
SDC3-201ENST00000336798 HS6ST2Q96MM7 605 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 POPDC3Q9HBV1 291 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 RDH16O75452 317 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 APEHP13798 732 aaKnown RBP11.96□□□□□ -0.5
SDC3-201ENST00000336798 PSMB10P40306 273 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 ARSDP51689 593 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 POU4F2Q12837 409 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 SPHARQ15513 63 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 BCL2A1Q16548 175 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 ELP2Q6IA86 826 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 CDHR3Q6ZTQ4 885 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 GPR149Q86SP6 731 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 OR5D16Q8NGK9 328 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 FKBP10Q96AY3 582 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 PLEKHJ1Q9NW61 149 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 ANKMY1Q9P2S6 941 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 LIPT1Q9Y234 373 aa11.96□□□□□ -0.5
SDC3-201ENST00000336798 CA3P07451 260 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 KDELR2P33947 212 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ALDH3B1P43353 468 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 PCGF3Q3KNV8 242 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 PXKQ7Z7A4 578 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 TEX26Q8N6G2 289 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 OR9Q2Q8NGE9 314 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SPTSSAQ969W0 71 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 CCDC106Q9BWC9 280 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 POTEKPQ9BYX7 375 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SUSD2Q9UGT4 822 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 A0A0A6YYC8 382 aaPredicted RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 C2orf72A6NCS6 295 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 I3L1I5 382 aaPredicted RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 GPR37L1O60883 481 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 RASAL1O95294 804 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SERPINA5P05154 406 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 RAB3BP20337 219 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 TMEM201Q5SNT2 666 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SLX4IPQ5VYV7 408 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 FAM122CQ6P4D5 195 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 TIFABQ6ZNK6 161 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 Q6ZSR6 202 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 DCUN1D4Q92564 292 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ZNF778Q96MU6 729 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ZNF705FA8MVS1 300 aaPredicted RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 RPS17P08708 135 aaKnown RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 ZNF705DP0CH99 300 aaPredicted RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 ZNF705BP0CI00 300 aaPredicted RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 TIMP2P16035 220 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 C5AR1P21730 350 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 MC3RP41968 323 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 HOXC5Q00444 222 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ZNF674Q2M3X9 581 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 OR4K3Q96R72 315 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 HSD3B7Q9H2F3 369 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ADAMTS10Q9H324 1103 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 PRMT8Q9NR22 394 aaPredicted RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 TMEM100Q9NV29 134 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SLC45A1Q9Y2W3 748 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 NFS1Q9Y697 457 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 CREBL2O60519 120 aaPredicted RBP11.95□□□□□ -0.5
SDC3-201ENST00000336798 WDPCPO95876 746 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 F10P00742 488 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 CAPNS1P04632 268 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 BMP4P12644 408 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 CHMP24386 653 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 P2RY2P41231 377 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 RABIFP47224 123 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 DYRK1AQ13627 763 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 ZNF425Q6IV72 752 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 LRRC18Q8N456 261 aa11.95□□□□□ -0.5
SDC3-201ENST00000336798 SAMD11Q96NU1 681 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms