RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 THAP4Q8WY91 577 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SCAMP4Q969E2 229 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 TDP1Q9NUW8 608 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 CHST2Q9Y4C5 530 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SERTM1A2A2V5 107 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 H0YIV9 168 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 FRS3O43559 492 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SOX30O94993 753 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 THBS2P35442 1172 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 RPL35P42766 123 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 GRHL2Q6ISB3 625 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 TFAP2EQ6VUC0 442 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 OR5D16Q8NGK9 328 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC22A8Q8TCC7 542 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ELMOD3Q96FG2 381 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 GPR62Q9BZJ7 368 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF436Q9C0F3 470 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ZCCHC4Q9H5U6 513 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 MAN2C1Q9NTJ4 1040 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 TAAR2Q9P1P5 351 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SEC14L3Q9UDX4 400 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF98A6NK75 572 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 CDH11P55287 796 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 PTSQ03393 145 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 TAP2Q03519 686 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 HSPB3Q12988 150 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ELOAQ14241 798 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 GPR33Q49SQ1 333 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 C3P1Q6ZMU1 363 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 HDDC2Q7Z4H3 204 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 OAFQ86UD1 273 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 C2orf73Q8N5S3 287 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 IL17RCQ8NAC3 791 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 FBXO15Q8NCQ5 510 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 CLP1Q92989 425 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 PDXPQ96GD0 296 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 RADILQ96JH8 1075 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 FUZQ9BT04 418 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 FNDC11Q9BVV2 318 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 KLHL1Q9NR64 748 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 STOX2Q9P2F5 926 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 PHF11Q9UIL8 331 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SCP2D1Q9UJQ7 156 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF175Q9Y473 711 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 NUBP2Q9Y5Y2 271 aa12.64□□□□□ -0.39
CCDC88C-201ENST00000331194 SCN8AQ9UQD0 1980 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 PRAMEF27A3QJZ7 478 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 RTCAO00442 366 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 FZD7O75084 574 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 CBX7O95931 251 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 DRD2P14416 443 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 AKR1A1P14550 325 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 ATP5A1P25705 553 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 PTBP1P26599 531 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 RGS7BPQ6MZT1 257 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC36A4Q6YBV0 504 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 OR6T1Q8NGN1 323 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 OR8K3Q8NH51 312 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 ZNF649Q9BS31 505 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 QRSL1Q9H0R6 528 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 DDX31Q9H8H2 851 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 COPS3Q9UNS2 423 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 CSNK1G3Q9Y6M4 447 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 CEP290O15078 2479 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC9B1P1A6NJY1 282 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 APOC3P02656 99 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 SRPRAP08240 638 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 NMBP08949 121 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 XPAP23025 273 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 E2F1Q01094 437 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 TMEM255AQ5JRV8 349 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 CDKL4Q5MAI5 379 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 LRRC28Q86X40 367 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 BBS10Q8TAM1 723 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 ADAMTS19Q8TE59 1207 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 KLK6Q92876 244 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 YIPF5Q969M3 257 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 ERMAPQ96PL5 475 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 TEFMQ96QE5 360 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 CA10Q9NS85 328 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 POMT2Q9UKY4 750 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 BAIAP2Q9UQB8 552 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 VWA8A3KMH1 1905 aa12.63□□□□□ -0.39
CCDC88C-201ENST00000331194 SOCS6O14544 535 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 GMDSO60547 372 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ACP5P13686 325 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ACSL1P33121 698 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 BAMBIQ13145 260 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 DUSP6Q16828 381 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ADGRF1Q5T601 910 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 LYPLAL1Q5VWZ2 237 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 PRICKLE2Q7Z3G6 844 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 TRMT10AQ8TBZ6 339 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 ASB12Q8WXK4 309 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 CNOT9Q92600 299 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 PTP4A1Q93096 173 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 OR10A4Q9H209 315 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 AUNIPQ9H7T9 357 aa12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 EXOSC1Q9Y3B2 195 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-201ENST00000331194 SLC38A8A6NNN8 435 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms