RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NPIPA5E9PKD4 350 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 M0R129 80 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 OR8U9P0C7N5 309 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 TPT1P13693 172 aaKnown RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 DDOSTP39656 456 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 DPP6P42658 865 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 RRAS2P62070 204 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 DOC2AQ14183 400 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 RGNQ15493 299 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 SERPINA11Q86U17 422 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ZNF709Q8N972 641 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 INPP5KQ9BT40 448 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 PRDM9Q9NQV7 894 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 RBFOX1Q9NWB1 397 aaKnown RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 KLHL21Q9UJP4 597 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 NPIPA1Q9UND3 350 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 DRGXA6NNA5 263 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 HEPACAM2A8MVW5 462 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 ACOT7O00154 380 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 SCDO00767 359 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 UGT2B7P16662 529 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 TNFRSF1BP20333 461 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 PRSS3P35030 304 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 BMPR1AP36894 532 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 MLLT3P42568 568 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 ALDH3B1P43353 468 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 KCNC1P48547 511 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 FOXA1P55317 472 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 RPS21P63220 83 aaKnown RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 MLLT11Q13015 90 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 TAZQ16635 292 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 UGT3A2Q3SY77 523 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 FLYWCH1Q4VC44 716 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 C14orf28Q4W4Y0 310 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 FOXB2Q5VYV0 432 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 LRRC28Q86X40 367 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 GPR150Q8NGU9 434 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 STK35Q8TDR2 534 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 DGAT2Q96PD7 388 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 CTRCQ99895 268 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 MRI1Q9BV20 369 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 BOCQ9BWV1 1114 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 IL17CQ9P0M4 197 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 EPHA6Q9UF33 1036 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 RPH3AQ9Y2J0 694 aaPredicted RBP10.9□□□□□ -0.66
VPS39-201ENST00000318006 ACTL7AQ9Y615 435 aa10.9□□□□□ -0.66
VPS39-201ENST00000318006 OR6C65A6NJZ3 312 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 LAMP1P11279 417 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 CCKBRP32239 447 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 CAPZA1P52907 286 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 VSX2P58304 361 aaPredicted RBP10.9□□□□□ -0.67
VPS39-201ENST00000318006 RPS27AP62979 156 aaKnown RBP10.9□□□□□ -0.67
VPS39-201ENST00000318006 UBA52P62987 128 aaKnown RBP10.9□□□□□ -0.67
VPS39-201ENST00000318006 MGAT3Q09327 533 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 HES5Q5TA89 166 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 PLBD1Q6P4A8 553 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 CRTC1Q6UUV9 634 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 PAQR9Q6ZVX9 377 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 ZNF550Q7Z398 422 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 GPR149Q86SP6 731 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 C12orf45Q8N5I9 185 aaPredicted RBP10.9□□□□□ -0.67
VPS39-201ENST00000318006 BADQ92934 168 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 TMEM19Q96HH6 336 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 HS6ST2Q96MM7 605 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 ORAI3Q9BRQ5 295 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 R3HDMLQ9H3Y0 253 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 SEC61A2Q9H9S3 476 aa10.9□□□□□ -0.67
VPS39-201ENST00000318006 A0A1B0GUL6 1792 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 A0A1W2PP55 124 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 ZNF254O75437 659 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 GNSP15586 552 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 CD9P21926 228 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 RAB5CP51148 216 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 TBPL1P62380 186 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 RAB40BQ12829 278 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 RAB11BQ15907 218 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 DPY19L2P1Q6NXN4 242 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 DCUN1D4Q92564 292 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 FCRL1Q96LA6 429 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 URM1Q9BTM9 101 aaKnown RBP10.89□□□□□ -0.67
VPS39-201ENST00000318006 KCNJ16Q9NPI9 418 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 B3GNT2Q9NY97 397 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 KLK4Q9Y5K2 254 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 AP1M2Q9Y6Q5 423 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 MYH4Q9Y623 1939 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 TRAV18A0A075B6X5 111 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 EIF3FO00303 357 aaPredicted RBP10.89□□□□□ -0.67
VPS39-201ENST00000318006 DNAJB6O75190 326 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 CSF1P09603 554 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 TRAPPC2P0DI81 140 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 TRAPPC2BP0DI82 140 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 AMY2BP19961 511 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 CST5P28325 142 aaPredicted RBP10.89□□□□□ -0.67
VPS39-201ENST00000318006 PCGF2P35227 344 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 GPR4P46093 362 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 SUOXP51687 545 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 OPCMLQ14982 345 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 SMN1Q16637 294 aaKnown RBP10.89□□□□□ -0.67
VPS39-201ENST00000318006 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms