RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DEFB134Q4QY38 66 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 SLC9B2Q86UD5 537 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 LYSMD2Q8IV50 215 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 TMEM234Q8WY98 164 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 SLC6A16Q9GZN6 736 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 C2orf74A8MZ97 194 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 CRHR2Q13324 411 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ALG10Q5BKT4 473 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ALG10BQ5I7T1 473 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ALKBH2Q6NS38 261 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 IFNL1Q8IU54 200 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 OR6N1Q8NGY5 312 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 TMEM40Q8WWA1 233 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 B3GAT2Q9NPZ5 323 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ASF1BQ9NVP2 202 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 CSNK1G3Q9Y6M4 447 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 HYKKA2RU49 373 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 MROH6A6NGR9 719 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 GIFP27352 417 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 PTPN6P29350 595 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 TUBB3Q13509 450 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 TBC1D25Q3MII6 688 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 KLHDC8AQ8IYD2 350 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ARRDC2Q8TBH0 407 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 HRASLS5Q96KN8 279 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 UNKLQ9H9P5 680 aaKnown RBP12.16□□□□□ -0.46
COL3A1-201ENST00000304636 INPP5EQ9NRR6 644 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 SLC7A7Q9UM01 511 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ACTL7AQ9Y615 435 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 RGPD2P0DJD1 1756 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ANKRD28O15084 1053 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 RNF144AP50876 292 aaPredicted RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ACSM3Q53FZ2 586 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 CTSL3PQ5NE16 218 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 KCTD20Q7Z5Y7 419 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF283Q8N7M2 679 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 DPH1Q9BZG8 443 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF701Q9NV72 531 aaPredicted RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 AK6Q9Y3D8 172 aaKnown RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 PPP1R3DO95685 299 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 SCG5P05408 212 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 POLR2IP36954 125 aaKnown RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 GATMP50440 423 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 SUOXP51687 545 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF41P51814 821 aaPredicted RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF91Q05481 1191 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 KRBOX4Q5JUW0 171 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 LEG1Q6P5S2 330 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 LRFN4Q6PJG9 635 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ADAMTS14Q8WXS8 1223 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 POT1Q9NUX5 634 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ELOVL2Q9NXB9 296 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 RASD1Q9Y272 281 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 A0A1W2PPL8 197 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 IGFBP4P22692 258 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 S100PP25815 95 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 CLRN1P58418 232 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 GPAT4Q86UL3 456 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 TPRA1Q86W33 373 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 OR4K17Q8NGC6 315 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 FIBINQ8TAL6 211 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 HCRTR2O43614 444 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 NDUFB2O95178 105 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ATXN1LP0C7T5 689 aaKnown RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 PRMT2P55345 433 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF616Q08AN1 781 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 KIAA0319Q5VV43 1072 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 FIGNL1Q6PIW4 674 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 MRPL10Q7Z7H8 261 aaKnown RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 CLDN22Q8N7P3 220 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 BRIX1Q8TDN6 353 aaKnown RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 OR2M4Q96R27 311 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 OR8D2Q9GZM6 311 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 OR6C2Q9NZP2 312 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 ABRACLQ9P1F3 81 aa12.15□□□□□ -0.46
COL3A1-201ENST00000304636 DNMT3AQ9Y6K1 912 aaPredicted RBP12.15□□□□□ -0.46
COL3A1-201ENST00000304636 PBX2P40425 430 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 CDK10Q15131 360 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 TP53I3Q53FA7 332 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 DNAJC5GQ8N7S2 189 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 GATSQ8NAP1 163 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 BEST4Q8NFU0 473 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 SCGB1C1Q8TD33 95 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 DDX31Q9H8H2 851 aaKnown RBP12.15□□□□□ -0.47
COL3A1-201ENST00000304636 CSNK1G1Q9HCP0 422 aa12.15□□□□□ -0.47
COL3A1-201ENST00000304636 RBFOX1Q9NWB1 397 aaKnown RBP12.15□□□□□ -0.47
COL3A1-201ENST00000304636 MEGF11A6BM72 1044 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 METTL15A6NJ78 407 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 GPR89AB7ZAQ6 455 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 MUSKO15146 869 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 GPR89BP0CG08 455 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 GABRA5P31644 462 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 MMP12P39900 470 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 DLX5P56178 289 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 ERVK-25P63136 954 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 SLC18B1Q6NT16 456 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 FUNDC1Q8IVP5 155 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 WDR83Q9BRX9 315 aaKnown RBP12.14□□□□□ -0.47
COL3A1-201ENST00000304636 SYNPO2LQ9H987 977 aa12.14□□□□□ -0.47
COL3A1-201ENST00000304636 ASB6Q9NWX5 421 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms