RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NPBWR1P48145 328 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 THBS3P49746 956 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 ART1P52961 327 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 PSMA6P60900 246 aaKnown RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 WDR5P61964 334 aaKnown RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 ACVR1Q04771 509 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 GPR176Q14439 515 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 UBE2NLQ5JXB2 153 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 PELI3Q8N2H9 469 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 FAM71CQ8NEG0 241 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 OR1J2Q8NGS2 313 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 PYCR2Q96C36 320 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 SGIP1Q9BQI5 828 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 MECRQ9BV79 373 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 EIF5A2Q9GZV4 153 aaKnown RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 ATG10Q9H0Y0 220 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 BCO1Q9HAY6 547 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TREX1Q9NSU2 369 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 KLHL13Q9P2N7 655 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 C19orf25Q9UFG5 118 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3DA0A087WVF3 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3IA0A087WXS9 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3EA0A087X179 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3KA0A087X1G2 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3FA6NER0 549 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3LB9A6J9 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 FTCDNL1E5RQL4 147 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 GAPDHSO14556 408 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 HCRTR2O43614 444 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 VEGFDO43915 354 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TSPAN15O95858 294 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 CHRM5P08912 532 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 ELFN1P0C7U0 828 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3HP0C7X1 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 CR2P20023 1033 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 CAPN3P20807 821 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 FRKP42685 505 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 CDKN2CP42773 168 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 PTPRRQ15256 657 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 SF3B4Q15427 424 aaKnown RBP eCLIP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 SCGB2B2Q4G0G5 96 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 DNLZQ5SXM8 178 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3GQ6DHY5 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3CQ6IPX1 549 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 DEFB128Q7Z7B8 93 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D3Q8IZP1 549 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 OR5W2Q8NH69 310 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF300Q96RE9 604 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TMPRSS13Q9BYE2 586 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 MVB12BQ9H7P6 319 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 IFT22Q9H7X7 185 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 BABAM2Q9NXR7 383 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 KCNG2Q9UJ96 466 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 SLC22A14Q9Y267 594 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 MRPS23Q9Y3D9 190 aaKnown RBP4.99□□□□□ -1.61
SCN1A-201ENST00000303395 RIPK3Q9Y572 518 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 ASB1Q9Y576 335 aa4.99□□□□□ -1.61
SCN1A-201ENST00000303395 TP53BP1Q12888 1972 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 IGKV6D-21A0A0A0MT36 114 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 A8MVM7 634 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 J3KR12 359 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CPNE3O75131 537 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SH3BGRLO75368 114 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 DPEP1P16444 411 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GPX2P18283 190 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 NT5EP21589 574 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 RBMXP38159 391 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SSR2P43308 183 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ALDH3B1P43353 468 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TLE4Q04727 773 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TAF9Q16594 264 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 HYAL4Q2M3T9 481 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 C9orf64Q5T6V5 341 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SCIMPQ6UWF3 145 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 RANBP10Q6VN20 620 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 KDM8Q8N371 416 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PHTF2Q8N3S3 785 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ARL14Q8N4G2 192 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM145Q8NBT3 493 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 OR6K6Q8NGW6 343 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 RNF141Q8WVD5 230 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GPR21Q99679 349 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FAM83CQ9BQN1 747 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF559Q9BR84 538 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ADAM19Q9H013 955 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PSORS1C1Q9UIG5 152 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FBXO7Q9Y3I1 522 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SCDO00767 359 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PNMTP11086 282 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ACP2P11117 423 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PSMB1P20618 241 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GNRHRP30968 328 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 HCCSP53701 268 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SLC35A2P78381 396 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TARBP2Q15633 366 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CTU2Q2VPK5 515 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PIAS4Q8N2W9 510 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CADM2Q8N3J6 435 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 BRIX1Q8TDN6 353 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PRRC1Q96M27 445 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms