RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 NXF2Q9GZY0 626 aaKnown RBP12.64□□□□□ -0.39
CTDP1-202ENST00000299543 CERS4Q9HA82 394 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 SLC25A19Q9HC21 320 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 MBNL1Q9NR56 388 aaKnown RBP12.64□□□□□ -0.39
CTDP1-202ENST00000299543 KCND3Q9UK17 655 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 HCN2Q9UL51 889 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 STUB1Q9UNE7 303 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 GPR34Q9UPC5 381 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 ICKQ9UPZ9 632 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 OBSL1O75147 1896 aa12.64□□□□□ -0.39
CTDP1-202ENST00000299543 TCF20Q9UGU0 1960 aaKnown RBP12.64□□□□□ -0.39
CTDP1-202ENST00000299543 SMIM11AP58511 58 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 CDK3Q00526 305 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 NCF4Q15080 339 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 WSCD2Q2TBF2 565 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 RD3Q7Z3Z2 195 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 OR52I1Q8NGK6 324 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 RADILQ96JH8 1075 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 USB1Q9BQ65 265 aaKnown RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 FAM83CQ9BQN1 747 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 SLC22A4Q9H015 551 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 SCPEP1Q9HB40 452 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 CAPN10Q9HC96 672 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 A3GALT2U3KPV4 340 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 V9GYH0 126 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 SLC35F4A4IF30 521 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 KIAA0355O15063 1070 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 TOXO94900 526 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 PLATP00750 562 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 RPN2P04844 631 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 CHRM4P08173 479 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 RAB14P61106 215 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 SLC9A5Q14940 896 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 ZNF658BQ4V348 819 aaPredicted RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 SYT14P1Q58G82 188 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 ZNF793Q6ZN11 406 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 UBE3DQ7Z6J8 389 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 KIAA0907Q7Z7F0 614 aaPredicted RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 VRK2Q86Y07 508 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 TEX47Q8TBZ9 253 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 OTUB2Q96DC9 234 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 FAM46AQ96IP4 442 aaKnown RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 AMDHD1Q96NU7 426 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 FCRL4Q96PJ5 515 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 TMED9Q9BVK6 235 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 TXNL4BQ9NX01 149 aaKnown RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 GRIP1Q9Y3R0 1128 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 ATG4BQ9Y4P1 393 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 INSL6Q9Y581 213 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 TOR1AO14656 332 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 MID1O15344 667 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 MNX1P50219 401 aaPredicted RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 SRP54P61011 504 aaKnown RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 CSNK1G2P78368 415 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 RPA4Q13156 261 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 ZNF57Q68EA5 555 aaPredicted RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 SLC30A6Q6NXT4 461 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 TBC1D19Q8N5T2 526 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 NANOGP1Q8N7R0 232 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 RNFT2Q96EX2 444 aa12.63□□□□□ -0.39
CTDP1-202ENST00000299543 INSM2Q96T92 566 aaPredicted RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 MRPL39Q9NYK5 338 aaKnown RBP12.63□□□□□ -0.39
CTDP1-202ENST00000299543 CXorf51AA0A1B0GTR3 108 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 FAM170BA6NMN3 283 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 CASKO14936 926 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 PROS1P07225 676 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 PCBP4P57723 403 aaKnown RBP12.62□□□□□ -0.39
CTDP1-202ENST00000299543 SNRPGP62308 76 aaKnown RBP12.62□□□□□ -0.39
CTDP1-202ENST00000299543 RPS25P62851 125 aaKnown RBP12.62□□□□□ -0.39
CTDP1-202ENST00000299543 ZNF311Q5JNZ3 666 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 WFIKKN2Q8TEU8 576 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 ZNF582Q96NG8 517 aaPredicted RBP12.62□□□□□ -0.39
CTDP1-202ENST00000299543 UQCC2Q9BRT2 126 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 FZD3Q9NPG1 666 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 CYB5R1Q9UHQ9 305 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 ENTPD4Q9Y227 616 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 CMAHPQ9Y471 501 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 A8MVJ9 347 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 C1QTNF3-AMACRE9PGA6 284 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 RAB36O95755 333 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 SYPP08247 313 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 CD79BP40259 229 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 RFX3P48380 749 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 LARS2Q15031 903 aaKnown RBP12.62□□□□□ -0.39
CTDP1-202ENST00000299543 TRIQKQ629K1 86 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 PROKR2Q8NFJ6 384 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 APOBEC4Q8WW27 367 aaKnown RBP12.62□□□□□ -0.39
CTDP1-202ENST00000299543 TBX5Q99593 518 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 FAIM2Q9BWQ8 316 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 TAPBPLQ9BX59 468 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 SAP130Q9H0E3 1048 aa12.62□□□□□ -0.39
CTDP1-202ENST00000299543 ISM1B1AKI9 464 aa12.61□□□□□ -0.39
CTDP1-202ENST00000299543 NCR1O76036 304 aa12.61□□□□□ -0.39
CTDP1-202ENST00000299543 SLC22A5O76082 557 aa12.61□□□□□ -0.39
CTDP1-202ENST00000299543 FGF19O95750 216 aa12.61□□□□□ -0.39
CTDP1-202ENST00000299543 CERS1P27544 350 aa12.61□□□□□ -0.39
CTDP1-202ENST00000299543 GPR4P46093 362 aa12.61□□□□□ -0.39
CTDP1-202ENST00000299543 DUSP2Q05923 314 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms