RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 DUSP22Q9NRW4 184 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 RYDENQ9NUL5 291 aaKnown RBP11.7□□□□□ -0.54
SS18-202ENST00000269138 TUBA8Q9NY65 449 aaPredicted RBP11.7□□□□□ -0.54
SS18-202ENST00000269138 SLC25A37Q9NYZ2 338 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 CNIH4Q9P003 139 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 C2orf72A6NCS6 295 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 KLRC4-KLRK1H3BQV0 150 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 FBP2O00757 339 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 SLC28A2O43868 658 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 SHOX2O60902 331 aaPredicted RBP11.7□□□□□ -0.54
SS18-202ENST00000269138 ICOSLGO75144 302 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 KCNH1O95259 989 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 KRT16P08779 473 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 OR12D1P0DN82 309 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 MST1P26927 711 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 PTGDSP41222 190 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 PSPHP78330 225 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 C19orf57Q0VDD7 668 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.7□□□□□ -0.54
SS18-202ENST00000269138 LRIF1Q5T3J3 769 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 DLEU7Q6UYE1 221 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 CPT1CQ8TCG5 803 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 XAGE5Q8WWM1 108 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 NTNG2Q96CW9 530 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 FRMD6Q96NE9 622 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 FAM173AQ9BQD7 235 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 ANGPTL4Q9BY76 406 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 TPT1P8Q9HAU6 139 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 GALNT9Q9HCQ5 603 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 GIN1Q9NXP7 522 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 VAPAQ9P0L0 249 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 LEF1Q9UJU2 399 aaPredicted RBP11.7□□□□□ -0.54
SS18-202ENST00000269138 NDUFAF1Q9Y375 327 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 HRH3Q9Y5N1 445 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 CAPN7Q9Y6W3 813 aa11.7□□□□□ -0.54
SS18-202ENST00000269138 LOC100653049A0A140TA62 436 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 PRAMEF27A3QJZ7 478 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 PRAMEF25A6NGN4 478 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 C17orf51A8MQB3 221 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 CCDC22O60826 627 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 ABCB7O75027 752 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 KRT34O76011 436 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 UNC5CO95185 931 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 UTS2O95399 124 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 MVDP53602 400 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 TLE1Q04724 770 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 FOXO1Q12778 655 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 EFR3AQ14156 821 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 IGFBP7Q16270 282 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 INAQ16352 499 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 DCST2Q5T1A1 773 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 FAM180AQ6UWF9 173 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 SNX32Q86XE0 403 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 TREML1Q86YW5 311 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 POU5F2Q8N7G0 328 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 ZFP62Q8NB50 900 aaPredicted RBP11.69□□□□□ -0.54
SS18-202ENST00000269138 TSPEARQ8WU66 669 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 TMCO6Q96DC7 493 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 SECISBP2Q96T21 854 aaKnown RBP11.69□□□□□ -0.54
SS18-202ENST00000269138 BARD1Q99728 777 aaKnown RBP11.69□□□□□ -0.54
SS18-202ENST00000269138 CCDC106Q9BWC9 280 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 MYLK2Q9H1R3 596 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 TSPAN10Q9H1Z9 355 aaPredicted RBP11.69□□□□□ -0.54
SS18-202ENST00000269138 METTL7AQ9H8H3 244 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 IL1RL2Q9HB29 575 aa11.69□□□□□ -0.54
SS18-202ENST00000269138 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.69□□□□□ -0.54
SS18-202ENST00000269138 TRBV5-3A0A0A0MS03 114 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 NPIPA5A0A0B4J1W7 369 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 ANKRD33BA6NCL7 494 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 LRRC3CA6NJW4 275 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 FAM166BA8MTA8 275 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 NPIPA7E9PJI5 369 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 CLIC1O00299 241 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 HMGN4O00479 90 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 ADAM10O14672 748 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 ANGPT2O15123 496 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 FADS1O60427 444 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 TRIM3O75382 744 aaPredicted RBP11.68□□□□□ -0.54
SS18-202ENST00000269138 KRT75O95678 551 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 NPIPA8P0DM63 369 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 ETFAP13804 333 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 ADSLP30566 484 aaPredicted RBP11.68□□□□□ -0.54
SS18-202ENST00000269138 KHKP50053 298 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 KCNJ2P63252 427 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 RPP38P78345 283 aaKnown RBP11.68□□□□□ -0.54
SS18-202ENST00000269138 FUT5Q11128 374 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.68□□□□□ -0.54
SS18-202ENST00000269138 GRAMD1BQ3KR37 738 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 FNDC7Q5VTL7 733 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 ZNF324BQ6AW86 544 aaPredicted RBP11.68□□□□□ -0.54
SS18-202ENST00000269138 APOOLQ6UXV4 268 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 DPP10Q8N608 796 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 FAM98AQ8NCA5 519 aaKnown RBP11.68□□□□□ -0.54
SS18-202ENST00000269138 OR4C3Q8NH37 302 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 RNF138Q8WVD3 245 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 FAR1Q8WVX9 515 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 JSRP1Q96MG2 331 aaPredicted RBP11.68□□□□□ -0.54
SS18-202ENST00000269138 SDF2Q99470 211 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 DOHHQ9BU89 302 aa11.68□□□□□ -0.54
SS18-202ENST00000269138 RTN4RQ9BZR6 473 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms