RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 IL1AP01583 271 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 FUT1P19526 365 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 GAS1P54826 345 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 DHCR24Q15392 516 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 PLET1Q6UQ28 207 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 GDPGP1Q6ZNW5 385 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 KCTD20Q7Z5Y7 419 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 AMZ2Q86W34 360 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 GHDCQ8N2G8 530 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 C19orf18Q8NEA5 215 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 OR2L2Q8NH16 312 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 TEX47Q8TBZ9 253 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 SMAP2Q8WU79 429 aaPredicted RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 TRIM63Q969Q1 353 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 SENP5Q96HI0 755 aaPredicted RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 AMDHD1Q96NU7 426 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 WDFY2Q96P53 400 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 FUZQ9BT04 418 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 WACQ9BTA9 647 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 NEUROD4Q9HD90 331 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ZSCAN32Q9NX65 697 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 COQ3Q9NZJ6 369 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 NPAP1Q9NZP6 1156 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 SLC9A8Q9Y2E8 581 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ALG5Q9Y673 324 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 MYO15AQ9UKN7 3530 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 OTOL1A6NHN0 477 aaPredicted RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 ATP6V1G2-DDX39BF2Z307 99 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 PIP5K1CO60331 668 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 TSC22D2O75157 780 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 IFI30P13284 250 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 KELP23276 732 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 PPP2R1BP30154 601 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 WASP42768 502 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 SNTA1Q13424 505 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ADAM15Q13444 863 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ASAH1Q13510 395 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 PLK5Q496M5 336 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 RNASE12Q5GAN4 147 aaKnown RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 C18orf63Q68DL7 685 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ZNF57Q68EA5 555 aaPredicted RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 SDE2Q6IQ49 451 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ZNF730Q6ZMV8 503 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ASB18Q6ZVZ8 466 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 NUDT13Q86X67 352 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 NKAIN4Q8IVV8 208 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 FAM109AQ8N4B1 249 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 FBXL6Q8N531 539 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 LINC01555Q8NAE3 123 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 KAT2AQ92830 837 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 UFD1Q92890 307 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 SMARCD2Q92925 531 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 MSLNLQ96KJ4 702 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 ZCCHC2Q9C0B9 1178 aaKnown RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 C6orf106Q9H6K1 298 aaPredicted RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 MED20Q9H944 212 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 SEMA4GQ9NTN9 838 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 NDOR1Q9UHB4 597 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 CLEC4AQ9UMR7 237 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 SF3B6Q9Y3B4 125 aaKnown RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 OR1A2Q9Y585 309 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 NUP210Q8TEM1 1887 aaPredicted RBP9.43□□□□□ -0.9
LIG3-201ENST00000262327 A0A1W2PRQ8 180 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ISM1B1AKI9 464 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FAM25AB3EWG3 89 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FAM25CB3EWG5 89 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FAM25GB3EWG6 89 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SCO1O75880 301 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 TRHRP34981 398 aaPredicted RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 CCR8P51685 355 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SMSP52788 366 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 CDH11P55287 796 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 STXBP1P61764 594 aaKnown RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 EFR3AQ14156 821 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 LCN1P1Q5VSP4 162 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 LCTLQ6UWM7 567 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 RRM2BQ7LG56 351 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 KLBQ86Z14 1044 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FBXO15Q8NCQ5 510 aaPredicted RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 SIMC1Q8NDZ2 872 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 COL26A1Q96A83 441 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ASB16Q96NS5 453 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ZNF576Q9H609 170 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 GALNT9Q9HCQ5 603 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 IMP3Q9NV31 184 aaKnown RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 PLEKHM1Q9Y4G2 1056 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 REV3LO60673 3130 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 TMEM265A0A087WTH1 108 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 A0A0X1KG70 313 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 FAM240BA0A1B0GVZ2 78 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 TSPAN11A1L157 253 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 SOCS6O14544 535 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 NARSO43776 548 aaKnown RBP9.42□□□□□ -0.9
LIG3-201ENST00000262327 ACP2P11117 423 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 ADRB3P13945 408 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 TRIM23P36406 574 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 MAP2K3P46734 347 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 CDK5Q00535 292 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 COL19A1Q14993 1142 aa9.42□□□□□ -0.9
LIG3-201ENST00000262327 LTB4RQ15722 352 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms