RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 FBP2O00757 339 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 CASP6P55212 293 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 PIN1Q13526 163 aaPredicted RBP12.83□□□□□ -0.35
SF3A1-201ENST00000215793 RSU1Q15404 277 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 ELMOD2Q8IZ81 293 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 ARL14Q8N4G2 192 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 LHPPQ9H008 270 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 ARNT2Q9HBZ2 717 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 FTSJ1Q9UET6 329 aa12.83□□□□□ -0.35
SF3A1-201ENST00000215793 SETD1AO15047 1707 aaKnown RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 DNAJC25-GNG10A0A024R161 153 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 A0A1W2PQL4 384 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 A6NCN8 305 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF701M0R085 212 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 AMY2AP04746 511 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 KIAA0895LQ68EN5 471 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 CPOQ8IVL8 374 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 CPXM2Q8N436 756 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 RRNAD1Q96FB5 475 aaKnown RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 CPEB1Q9BZB8 566 aaKnown RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 RNF215Q9Y6U7 377 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 GGT3PA6NGU5 568 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 TRIM64CA6NLI5 447 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 ACOT7O00154 380 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 SEC14L5O43304 696 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 UBL4AP11441 157 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 PRSS3P35030 304 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 UBE2NP61088 152 aaKnown RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 HNRNPA1L2Q32P51 320 aaKnown RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 CLLU1OSQ5K130 101 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 B3GNT9Q6UX72 402 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF704Q6ZNC4 412 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 TANKQ92844 425 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 ALOXE3Q9BYJ1 711 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 DNTTIP1Q9H147 329 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 PRELID1Q9Y255 219 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 IFT172Q9UG01 1749 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 ONECUT3O60422 494 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 NR0B1P51843 470 aaKnown RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 NCCRP1Q6ZVX7 275 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-201ENST00000215793 DPPA4Q7L190 304 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 DTX3Q8N9I9 347 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 GPR26Q8NDV2 337 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 ABHD11Q8NFV4 315 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 SFXN5Q8TD22 340 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 ASB15Q8WXK1 588 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 C5AR2Q9P296 337 aa12.83□□□□□ -0.36
SF3A1-201ENST00000215793 M0R3H8 397 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 TMEM225BP0DP42 221 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 GPX3P22352 226 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 CDK2P24941 298 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 CYCSP99999 105 aaKnown RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 USF2Q15853 346 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 C17orf99Q6UX52 265 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 PDZD9Q8IXQ8 264 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 PIANPQ8IYJ0 282 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 OR9Q2Q8NGE9 314 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 OR5H2Q8NGV7 314 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 ITPKCQ96DU7 683 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 MSANTD3Q96H12 275 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 CDCA3Q99618 268 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 ALG8Q9BVK2 526 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 KCNK13Q9HB14 408 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 GDE1Q9NZC3 331 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 B3GNT3Q9Y2A9 372 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 FAM208AQ9UK61 1670 aaKnown RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 SYT7O43581 403 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 SCGB2A1O75556 95 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 PPP1R3DO95685 299 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 TNFRSF1BP20333 461 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 DRD1P21728 446 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 CHMP24386 653 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 TLE3Q04726 772 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 RAB41Q5JT25 222 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 GARNL3Q5VVW2 1013 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 PLAG1Q6DJT9 500 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 SFRP4Q6FHJ7 346 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 HMBOX1Q6NT76 420 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF619Q8N2I2 560 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 VWA5B2Q8N398 1253 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 IQCF1Q8N6M8 205 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 PBDC1Q9BVG4 233 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 VAPAQ9P0L0 249 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 TRAV18A0A075B6X5 111 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 hCG_1807616A0A1W2PRN6 198 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 A6NIZ1 184 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 SYPP08247 313 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 CD34P28906 385 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 PTH2RP49190 550 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 RAP1BP61224 184 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 RAP1AP62834 184 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 NADSYN1Q6IA69 706 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.82□□□□□ -0.362e-7■■■■■ 34.3
SF3A1-201ENST00000215793 ZNF417Q8TAU3 575 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 SPRYD4Q8WW59 207 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 NANOS1Q8WY41 292 aaKnown RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 SORT1Q99523 831 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 EIF5A2Q9GZV4 153 aaKnown RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 CWH43Q9H720 699 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 UNKLQ9H9P5 680 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms