RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZBTB44Q8NCP5 570 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ICA1LQ8NDH6 482 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 BBS1Q8NFJ9 593 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 GOT1L1Q8NHS2 421 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 RFESDQ8TAC1 157 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NEIL3Q8TAT5 605 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LHX4Q969G2 390 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 MYDGFQ969H8 173 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ADIPOR1Q96A54 375 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SLC25A36Q96CQ1 311 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 HAVCR1Q96D42 359 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SLC25A38Q96DW6 304 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CCDC51Q96ER9 411 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 DNAJA3Q96EY1 480 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 DTD2Q96FN9 168 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TMEM80Q96HE8 168 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 RPGRIP1Q96KN7 1286 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 MAGEB18Q96M61 343 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CCDC114Q96M63 670 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NOL4LQ96MY1 436 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 GBP5Q96PP8 586 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 OR5M11Q96RB7 305 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 IL4I1Q96RQ9 567 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ADPGKQ9BRR6 497 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 APOOQ9BUR5 198 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 RNF126Q9BV68 326 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 FUNDC2Q9BWH2 189 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 FUT8Q9BYC5 575 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NLNQ9BYT8 704 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SLC25A39Q9BZJ4 359 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 CHIAQ9BZP6 476 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ELOVL4Q9GZR5 314 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SIRPDQ9H106 197 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NAPBQ9H115 298 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 C2orf40Q9H1Z8 148 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CARD9Q9H257 536 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TMEM245Q9H330 911 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 Q9H3A6 140 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CUEDC2Q9H467 287 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NXF3Q9H4D5 531 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 EHD1Q9H4M9 534 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 RNF41Q9H4P4 317 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 ALG9Q9H6U8 611 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 DCTPP1Q9H773 170 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PRMT8Q9NR22 394 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 PIGVQ9NUD9 493 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ABCB8Q9NUT2 735 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TMEM161AQ9NX61 479 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TERF2IPQ9NYB0 399 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 EHFQ9NZC4 300 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SEPT10Q9P0V9 454 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 VPS18Q9P253 973 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ANKMY1Q9P2S6 941 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 DPM3Q9P2X0 92 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SPRR3Q9UBC9 169 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 MIOXQ9UGB7 285 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ARMCX3Q9UH62 379 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 FBXL5Q9UKA1 691 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 KLK12Q9UKR0 248 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 DUSP12Q9UNI6 340 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 EXOC7Q9UPT5 735 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PDE10AQ9Y233 779 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 L3MBTL1Q9Y468 752 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZNF175Q9Y473 711 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 MTF2Q9Y483 593 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 WSB1Q9Y6I7 421 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SYNJ2O15056 1496 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TNRQ92752 1358 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CDC42BPBQ9Y5S2 1711 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 IGLV2-33A0A075B6J2 118 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 IGHV7-81A0A0B4J1V7 117 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TRBV7-9A0A0J9YWB2 115 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 LOC100131303A0A0U1RQF7 123 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SAGE2PA6NJ88 616 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 USP27XA6NNY8 438 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD63C9JTQ0 380 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 H3BMH7 237 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 K7ERI5 159 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 WWP2O00308 870 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 DLGAP1O14490 977 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 OR7A17O14581 309 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 WDR46O15213 610 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 HCRTR1O43613 425 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SNAI2O43623 268 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 STX6O43752 255 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 FMO6PO60774 539 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 EIF5BO60841 1220 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF324O75467 553 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 CA11O75493 328 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 LYPLA1O75608 230 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 RAD51DO75771 328 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MMP23AO75900 390 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CABYRO75952 493 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 NOL4O94818 638 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SYNGR4O95473 234 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 APBB3O95704 486 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 ECDO95905 644 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 IGSF6O95976 241 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PGK1P00558 417 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 JCHAINP01591 159 aa0.22□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms