RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GPN3Q9UHW5 284 aaPredicted RBP17.1■□□□□ 0.33
CLN3-254ENST00000637050 C3orf18Q9UK00 162 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 WDR45Q9Y484 360 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 PCDHGA3Q9Y5H0 932 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 GXYLT2A0PJZ3 443 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 STX11O75558 287 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 GUSBP08236 651 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 FTH1P19P0C7X4 201 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 CT45A8P0DMV1 189 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 CT45A9P0DMV2 189 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 TNFRSF1BP20333 461 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 CYP27C1Q4G0S4 372 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 CT45A2Q5DJT8 189 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 CCNJQ5T5M9 372 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 NPSR1Q6W5P4 371 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 EPHX4Q8IUS5 362 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 METTL21AQ8WXB1 218 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 VPS50Q96JG6 964 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 BTBD9Q96Q07 612 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 NUDT9Q9BW91 350 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 SPRY4Q9C004 299 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 POLE3Q9NRF9 147 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 THSD1Q9NS62 852 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 CNOT11Q9UKZ1 510 aaKnown RBP17.1■□□□□ 0.33
CLN3-254ENST00000637050 MKLN1Q9UL63 735 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 DTNAQ9Y4J8 743 aa17.1■□□□□ 0.33
CLN3-254ENST00000637050 PCNX2A6NKB5 2137 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 TEX51A0A1B0GUA7 166 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 SAC3D1A6NKF1 404 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 C9J4A7 227 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 DPM1O60762 260 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 KCNK2O95069 426 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 ALPPP05187 535 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 PABPC4LP0CB38 370 aaKnown RBP17.09■□□□□ 0.33
CLN3-254ENST00000637050 TRHRP34981 398 aaPredicted RBP17.09■□□□□ 0.33
CLN3-254ENST00000637050 OR1E2P47887 323 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 PUM1Q14671 1186 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLN3-254ENST00000637050 SFT2D3Q587I9 215 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 TMEM205Q6UW68 189 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 IZUMO2Q6UXV1 221 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 OR1N1Q8NGS0 311 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 WDR36Q8NI36 951 aaKnown RBP17.09■□□□□ 0.33
CLN3-254ENST00000637050 PROX1Q92786 737 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 PMM1Q92871 262 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 ZG16BQ96DA0 208 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 ZNF354BQ96LW1 612 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 CRB3Q9BUF7 120 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 ITPAQ9BY32 194 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 QRSL1Q9H0R6 528 aaKnown RBP17.09■□□□□ 0.33
CLN3-254ENST00000637050 NDUFAF4Q9P032 175 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 OAZ3Q9UMX2 235 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 CFL2Q9Y281 166 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 GPR55Q9Y2T6 319 aaPredicted RBP17.09■□□□□ 0.33
CLN3-254ENST00000637050 SH3GLB1Q9Y371 365 aa17.09■□□□□ 0.33
CLN3-254ENST00000637050 SPAARA0A1B0GVQ0 90 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 C9orf172C9J069 976 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 ACOX3O15254 700 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 BRINP1O60477 761 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 DLGAP3O95886 979 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 ZNF26P17031 533 aaPredicted RBP17.08■□□□□ 0.32
CLN3-254ENST00000637050 CSRP1P21291 193 aaKnown RBP17.08■□□□□ 0.32
CLN3-254ENST00000637050 GPR143P51810 404 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 KCNC4Q03721 635 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 NCF4Q15080 339 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 OR2T5Q6IEZ7 315 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 ASCL5Q7RTU5 278 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 CACTIN-AS1Q8N1I8 211 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 ZNF619Q8N2I2 560 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 ZSCAN1Q8NBB4 408 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 OR2T29Q8NH02 315 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 TMBIM1Q969X1 311 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 RMND5BQ96G75 393 aaPredicted RBP17.08■□□□□ 0.32
CLN3-254ENST00000637050 PINK1Q9BXM7 581 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 COQ10BQ9H8M1 238 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 Q9N2J8 555 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 FBXO34Q9NWN3 711 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 LRRC42Q9Y546 428 aa17.08■□□□□ 0.32
CLN3-254ENST00000637050 GNGT2O14610 69 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 KIAA0513O60268 411 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 EPPINO95925 133 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 ITGA2P17301 1181 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 RPS4Y1P22090 263 aaKnown RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 PPICP45877 212 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 ZNF311Q5JNZ3 666 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 FIGNL1Q6PIW4 674 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 C6orf15Q6UXA7 325 aaPredicted RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 ZBTB49Q6ZSB9 765 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 HMGN2P46Q86SG4 172 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 COMTD1Q86VU5 262 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 OR4N2Q8NGD1 307 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 OR52P1PQ8NH57 321 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 ZNF300Q96RE9 604 aaPredicted RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 PHOX2BQ99453 314 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 ZNF184Q99676 751 aaPredicted RBP17.07■□□□□ 0.32
CLN3-254ENST00000637050 SLC29A1Q99808 456 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 MESP1Q9BRJ9 268 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 C9orf16Q9BUW7 83 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 AMBRA1Q9C0C7 1298 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 COPS7AQ9UBW8 275 aa17.07■□□□□ 0.32
CLN3-254ENST00000637050 PPIEQ9UNP9 301 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms