RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 FABP3P05413 133 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 FESP07332 822 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 HEXBP07686 556 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 OR1E2P47887 323 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 EIF3IQ13347 325 aaKnown RBP13.24□□□□□ -0.29
USP39-220ENST00000613444 IFI44LQ53G44 452 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 SFT2D3Q587I9 215 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 FAAH2Q6GMR7 532 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 HMGN2P46Q86SG4 172 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 AMER2Q8N7J2 671 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 COX18Q8N8Q8 333 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 OR4N2Q8NGD1 307 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 CIB1Q99828 191 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 WFDC6Q9BQY6 131 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 NUDT9Q9BW91 350 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 ITPAQ9BY32 194 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 KLHL4Q9C0H6 718 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 OR8D2Q9GZM6 311 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 NDUFAF4Q9P032 175 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 SEC14L3Q9UDX4 400 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 C3orf18Q9UK00 162 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 CHST2Q9Y4C5 530 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 PCDHGB3Q9Y5G1 929 aa13.24□□□□□ -0.29
USP39-220ENST00000613444 SOX30O94993 753 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 KCNK2O95069 426 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 DLGAP3O95886 979 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 CYC1P08574 325 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 FTH1P19P0C7X4 201 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 JMJD7P0C870 316 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 SLC5A2P31639 672 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 EMP2P54851 167 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 GRAMD1BQ3KR37 738 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 FAM69BQ5VUD6 431 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 TMEM205Q6UW68 189 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 TIPARPQ7Z3E1 657 aaKnown RBP13.23□□□□□ -0.29
USP39-220ENST00000613444 KRT73Q86Y46 540 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 ICA1LQ8NDH6 482 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 SPPL2AQ8TCT8 520 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 GEMIN6Q8WXD5 167 aaKnown RBP13.23□□□□□ -0.29
USP39-220ENST00000613444 DAZLQ92904 295 aaKnown RBP13.23□□□□□ -0.29
USP39-220ENST00000613444 MR1Q95460 341 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 BTBD9Q96Q07 612 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 SLC29A1Q99808 456 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 WDR77Q9BQA1 342 aaPredicted RBP13.23□□□□□ -0.29
USP39-220ENST00000613444 BDH2Q9BUT1 245 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 COQ10BQ9H8M1 238 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 THSD1Q9NS62 852 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 VNN3Q9NY84 501 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 PRODH2Q9UF12 536 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 MKLN1Q9UL63 735 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 OAZ3Q9UMX2 235 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 GPR55Q9Y2T6 319 aaPredicted RBP13.23□□□□□ -0.29
USP39-220ENST00000613444 WDR45Q9Y484 360 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 AHCTF1Q8WYP5 2266 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 CEP250Q9BV73 2442 aa13.23□□□□□ -0.29
USP39-220ENST00000613444 IGHV3-20A0A0C4DH32 117 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 CENPVL1A0A0U1RR11 272 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 KLF7O75840 302 aaPredicted RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 DIRAS1O95057 198 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 AK1P00568 194 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 IGKV1D-16P01601 117 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 PABPC4LP0CB38 370 aaKnown RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 POU6F2P78424 691 aaPredicted RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 ZAR1Q86SH2 424 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 NFAM1Q8NET5 270 aaPredicted RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 OR4D11Q8NGI4 311 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 OR1N1Q8NGS0 311 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 RASSF5Q8WWW0 418 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 EME1Q96AY2 570 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 SLC46A1Q96NT5 459 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 MTHFD2LQ9H903 347 aaPredicted RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 KCNE5Q9UJ90 142 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 NXT1Q9UKK6 140 aaKnown RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 BAG5Q9UL15 447 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 PPIEQ9UNP9 301 aaKnown RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 SH3GLB1Q9Y371 365 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 LRRC42Q9Y546 428 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 AK5Q9Y6K8 562 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 SAC3D1A6NKF1 404 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 SOCS2O14508 198 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 DYRK3O43781 588 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 KIAA0513O60268 411 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 BRINP1O60477 761 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 DPM1O60762 260 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 SEMA7AO75326 666 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 STX11O75558 287 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 GUSBP08236 651 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 RPS4Y1P22090 263 aaKnown RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 TRHRP34981 398 aaPredicted RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 IST1P53990 364 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 NCF4Q15080 339 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 ZNHIT3Q15649 155 aaPredicted RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 FIGNL1Q6PIW4 674 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 IZUMO2Q6UXV1 221 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 TMEM179BQ7Z7N9 219 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 C9orf40Q8IXQ3 194 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 MORN4Q8NDC4 146 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 TMBIM1Q969X1 311 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 ADIPOR1Q96A54 375 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 RMND5BQ96G75 393 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms