RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 KLHL14Q9P2G3 628 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 CBLCQ9ULV8 474 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 RNF103-CHMP3A0A140T963 221 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 GXYLT2A0PJZ3 443 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 PINLYPA6NC86 204 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 ANKRD33BA6NCL7 494 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 ABCB7O75027 752 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 CRYABP02511 175 aaKnown RBP15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 UQCRC2P22695 453 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 KRT20P35900 424 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 CDKN2CP42773 168 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 DNASE1L1P49184 302 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 PNLIPRP2P54317 469 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 GNGT1P63211 74 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 IGFBP7Q16270 282 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 CDC73Q6P1J9 531 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 MSANTD1Q6ZTZ1 278 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 C6orf120Q7Z4R8 191 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 JADE3Q92613 823 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 DIO2Q92813 273 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 EFHD2Q96C19 240 aaPredicted RBP15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 OTUB1Q96FW1 271 aaPredicted RBP15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 ACTRT3Q9BYD9 372 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 RABEP2Q9H5N1 569 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 OLAHQ9NV23 265 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 GIN1Q9NXP7 522 aa15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 FAF1Q9UNN5 650 aaPredicted RBP15.19■□□□□ 0.02
CCDC28A-202ENST00000611852 CCDC154A6NI56 674 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 ALOX5P09917 674 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 PLA2G2AP14555 144 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 IL12BP29460 328 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 LSP1P33241 339 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 RFC3P40938 356 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 CASP3P42574 277 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 SEC24CP53992 1094 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 RPP38P78345 283 aaKnown RBP15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 MRPS22P82650 360 aaKnown RBP15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 FOXK1P85037 733 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 DECR1Q16698 335 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 AGKQ53H12 422 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 RNFT1Q5M7Z0 435 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 BICRALQ6AI39 1079 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 TMEM81Q6P7N7 255 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 GK5Q6ZS86 529 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 POGLUT1Q8NBL1 392 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 NR4A3Q92570 626 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 RMND5BQ96G75 393 aaPredicted RBP15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 NODALQ96S42 347 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 STACQ99469 402 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 SLX1AQ9BQ83 275 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 PIGUQ9H490 435 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 RMND5AQ9H871 391 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 SLC52A3Q9NQ40 469 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 DUSP22Q9NRW4 184 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 RP1L1Q8IWN7 2480 aaPredicted RBP15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 NINQ8N4C6 2090 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 SVILO95425 2214 aa15.18■□□□□ 0.02
CCDC28A-202ENST00000611852 RFXANKO14593 260 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 KCNH1O95259 989 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 IL33O95760 270 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 GSNP06396 782 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 KRT16P08779 473 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 CD1EP15812 388 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 MST1P26927 711 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 MAN2A2P49641 1150 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 KCNK10P57789 538 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 RPS26P62854 115 aaKnown RBP15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 KCNJ2P63252 427 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 FOXO1Q12778 655 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 EFR3AQ14156 821 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 TBCELQ5QJ74 424 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 TRIML2Q8N7C3 387 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 C10orf82Q8WW14 230 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 NTNG2Q96CW9 530 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 TMCO6Q96DC7 493 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SPDL1Q96EA4 605 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 ITCHQ96J02 903 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SLC35A5Q9BS91 424 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 ANGPTL4Q9BY76 406 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SERHL2Q9H4I8 314 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 TUBA8Q9NY65 449 aaPredicted RBP15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 MRTO4Q9UKD2 239 aaKnown RBP15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 VPS4AQ9UN37 437 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 NR5A2O00482 541 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 WISP2O76076 250 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SOX30O94993 753 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 IGKV1D-16P01601 117 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 CYP4B1P13584 511 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 ZNF24P17028 368 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 CAPN3P20807 821 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 RFX3P48380 749 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 TDGF1P3P51864 188 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 PSMD4P55036 377 aaKnown RBP15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 ALDH6A1Q02252 535 aaKnown RBP15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SAXO2Q658L1 398 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 ZNF621Q6ZSS3 439 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 COX18Q8N8Q8 333 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 OR5D16Q8NGK9 328 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 FAM110BQ8TC76 370 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 ADAMTS15Q8TE58 950 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 404.4 ms