RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	CIB2	O75838	187 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	POR	P16435	677 aa	Predicted RBP	11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	NT5E	P21589	574 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	UQCRC2	P22695	453 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	MST1	P26927	711 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	PPP2R1B	P30154	601 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	MPI	P34949	423 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	PTGER4	P35408	488 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CHI3L1	P36222	383 aa	Predicted RBP	11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	MC3R	P41968	323 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	EFNA3	P52797	238 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CASP9	P55211	416 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	EEFSEC	P57772	596 aa	Known RBP	11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	OR4D2	P58180	307 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	STX4	Q12846	297 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	MINDY4	Q4G0A6	757 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	GDF7	Q7Z4P5	450 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	MRGPRG	Q86SM5	289 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	SAMD14	Q8IZD0	417 aa	Predicted RBP	11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	TRIML2	Q8N7C3	387 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	OR10A6	Q8NH74	314 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	WDR60	Q8WVS4	1066 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	METTL21A	Q8WXB1	218 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	KAT2A	Q92830	837 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	TSLP	Q969D9	159 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	FAM120B	Q96EK7	910 aa	Known RBP	11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	IMMP1L	Q96LU5	166 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	OR1F2P	Q96R84	312 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	SH3GL1	Q99961	368 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	KCTD14	Q9BQ13	255 aa	Predicted RBP	11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	ECSIT	Q9BQ95	431 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	PCDHAC1	Q9H158	963 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	ANKRA2	Q9H9E1	313 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CHST11	Q9NPF2	352 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	NECTIN3	Q9NQS3	549 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CLDN16	Q9Y5I7	305 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	CSMD1	Q96PZ7	3565 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	F8	P00451	2351 aa		11.74	□□□□□ -0.53
UPF1-208	ENST00000600012	OR10H2	O60403	315 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	HSD17B1	P14061	328 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	GRN	P28799	593 aa	Known RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	ERF	P50548	548 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	CASP6	P55212	293 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	HSD17B7	P56937	341 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	MRPS35	P82673	323 aa	Known RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	MS4A2	Q01362	244 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	GTF3C1	Q12789	2109 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	TP53BP2	Q13625	1128 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	KPNB1	Q14974	876 aa	Known RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF628	Q5EBL2	1059 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	COX20	Q5RI15	118 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	C1orf146	Q5VVC0	180 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	SAXO2	Q658L1	398 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	FAM111B	Q6SJ93	734 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	DGAT2L6	Q6ZPD8	337 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	RNF130	Q86XS8	419 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	PSMA8	Q8TAA3	256 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	PPWD1	Q96BP3	646 aa	Known RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF583	Q96ND8	569 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	VN1R1	Q9GZP7	353 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	KAT8	Q9H7Z6	458 aa	Known RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	ZCCHC3	Q9NUD5	404 aa	Known RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	STMN3	Q9NZ72	180 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	C19orf25	Q9UFG5	118 aa	Predicted RBP	11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	EGFL7	Q9UHF1	273 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	POMP	Q9Y244	141 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	MMACHC	Q9Y4U1	282 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	PCDHGB6	Q9Y5F9	930 aa		11.73	□□□□□ -0.53
UPF1-208	ENST00000600012	FAM220BP	B1ANY3	271 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	DNAJA2	O60884	412 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	SEC24D	O94855	1032 aa	Predicted RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	KRT75	O95678	551 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	ATP1B1	P05026	303 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	NUDT7	P0C024	238 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	CT62	P0C5K7	136 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	ETFA	P13804	333 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	PPIB	P23284	216 aa	Known RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	HTR1E	P28566	365 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	SOX18	P35713	384 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	CCT3	P49368	545 aa	Known RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	GZMM	P51124	257 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	MVD	P53602	400 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	PRKAG1	P54619	331 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	RPS26	P62854	115 aa	Known RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	ELF3	P78545	371 aa	Predicted RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	IGLV3-21	P80748	117 aa	Predicted RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	RHAG	Q02094	409 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	CYP51A1	Q16850	503 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF630	Q2M218	657 aa	Predicted RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	BTBD16	Q32M84	506 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	ZNF766	Q5HY98	468 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	PLAG1	Q6DJT9	500 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	XKRX	Q6PP77	449 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	TMEM64	Q6YI46	380 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	QSOX2	Q6ZRP7	698 aa		11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	CPEB2	Q7Z5Q1	589 aa	Known RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	NET1	Q7Z628	596 aa	Predicted RBP	11.72	□□□□□ -0.53
UPF1-208	ENST00000600012	CALHM3	Q86XJ0	350 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms