RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 SLC41A3Q96GZ6 507 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 DEFB118Q96PH6 123 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 TRNT1Q96Q11 434 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 ASCL2Q99929 193 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 ZNF577Q9BSK1 485 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PITPNM3Q9BZ71 974 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PRRG4Q9BZD6 226 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 LRRC19Q9H756 370 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 TMEM165Q9HC07 324 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 FAM207AQ9NSI2 230 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 VPS54Q9P1Q0 977 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 STX18Q9P2W9 335 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 DBF4Q9UBU7 674 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 PEF1Q9UBV8 284 aaKnown RBP4.31□□□□□ -1.72
SMAD4-216ENST00000593223 UBQLN2Q9UHD9 624 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 STUB1Q9UNE7 303 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 TNNQ9UQP3 1299 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 SLC9A8Q9Y2E8 581 aa4.31□□□□□ -1.72
SMAD4-216ENST00000593223 REV3LO60673 3130 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 KIF24Q5T7B8 1368 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 TJP1Q07157 1748 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 MAP1BP46821 2468 aaKnown RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 A0A0A6YYC8 382 aaPredicted RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 FAM240BA0A1B0GVZ2 78 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 A0A1W2PPM1 405 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 A0A1W2PPQ1 181 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 HEATR9A2RTY3 570 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 MEIOCA2RUB1 952 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 LRRIQ3A6PVS8 624 aaPredicted RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 I3L1I5 382 aaPredicted RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 HIP1O00291 1037 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 XPO1O14980 1071 aaKnown RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 LSM1O15116 133 aaKnown RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 POLR1CO15160 346 aaPredicted RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 CHADO15335 359 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 CBR3O75828 277 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 MBD3O95983 291 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 IQCF3P0C7M6 154 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 ZCCHC18P0CG32 403 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 ANPEPP15144 967 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 RPA2P15927 270 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 EEF1B2P24534 225 aaKnown RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 CYP2F1P24903 491 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 TIA1P31483 386 aaKnown RBP eCLIP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 SYKP43405 635 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 ARHGDIBP52566 201 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 AIF1P55008 147 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 SRP54P61011 504 aaKnown RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 SSTP61278 116 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 TAF10Q12962 218 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 PPIL2Q13356 520 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 VEZF1Q14119 521 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 GNA13Q14344 377 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 CCDC14Q49A88 953 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 C14orf177Q52M58 125 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 SPOUT1Q5T280 376 aaKnown RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 CARD17Q5XLA6 110 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 PRR27Q6MZM9 219 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 ADAMTSL2Q86TH1 951 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 LGI2Q8N0V4 545 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 ZNF611Q8N823 705 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 OR6S1Q8NH40 331 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 RNASE8Q8TDE3 154 aaKnown RBP4.3□□□□□ -1.72
SMAD4-216ENST00000593223 LIPHQ8WWY8 451 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 ROBO4Q8WZ75 1007 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 C11orf70Q9BRQ4 267 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 FICDQ9BVA6 458 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 SRD5A3Q9H8P0 318 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 UCK1Q9HA47 277 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 LY9Q9HBG7 655 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 CACNG5Q9UF02 275 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 PYGO1Q9Y3Y4 419 aa4.3□□□□□ -1.72
SMAD4-216ENST00000593223 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 IQANK1A0A1B0GTG1 560 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 HELTA6NFD8 242 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 OR52A4PA6NMU1 304 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 KBTBD13C9JR72 458 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PSMD11O00231 422 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 EPHB6O15197 1021 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ZW10O43264 779 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ACSL3O95573 720 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 GPIP06744 558 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 SBK2P0C263 348 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 CYP2B6P20813 491 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 DRD5P21918 477 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 NMT1P30419 496 aaKnown RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 HOXA6P31267 233 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 RRM2P31350 389 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 SERPINB6P35237 376 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 SPAM1P38567 509 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ALDH3B1P43353 468 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 CEBPDP49716 269 aaPredicted RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ASCL1P50553 236 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 B2MP61769 119 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 GALK2Q01415 458 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 OTUD4Q01804 1114 aaKnown RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ACSM1Q08AH1 577 aa4.29□□□□□ -1.72
SMAD4-216ENST00000593223 PPP1R8Q12972 351 aaKnown RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 ZNF177Q13360 481 aaPredicted RBP4.29□□□□□ -1.72
SMAD4-216ENST00000593223 XRCC4Q13426 336 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms