RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 COMMD10Q9Y6G5 202 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 A0A0U1RQS6 177 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 A0A1W2PQ09 198 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 A0A1W2PQ72 361 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 A0A1W2PQH9 124 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 LINC00862A6NCI5 91 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 NPEPPSL1A6NEC2 478 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ARRDC5A6NEK1 342 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CCDC182A6NF36 153 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 EFCAB10A6NFE3 127 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TUBAL3A6NHL2 446 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SNTNA6NMZ2 147 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CLCA1A8K7I4 914 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RHPN2P1A8MT19 583 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 C12orf71A8MTZ7 269 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 DFFAO00273 331 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SLC28A1O00337 649 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PPP6CO00743 305 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 IRAK2O43187 625 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RGS14O43566 566 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SSX4O60224 188 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MITFO75030 526 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 NOS1APO75052 506 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 PDE9AO76083 593 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SLCO2B1O94956 709 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 LGI1O95970 557 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 OTCP00480 354 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 GSTM1P09488 218 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 H2AFB1P0C5Y9 115 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 H2AFB2P0C5Z0 115 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MSL3P1P0C860 447 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 G6PDP11413 515 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CYP4B1P13584 511 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PNLIPP16233 465 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ZNF30P17039 623 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 AGAP20933 346 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PSMA3P25788 255 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PTBP1P26599 531 aaKnown RBP eCLIP3.9□□□□□ -1.79
LIG3-211ENST00000588713 HOXC12P31275 282 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CSF2RBP32927 897 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ARL1P40616 181 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 CA7P43166 264 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RFX2P48378 723 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 KCNC1P48547 511 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RGS6P49758 472 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 STK19P49842 368 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 GZMKP49863 264 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 GZMMP51124 257 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 DAPP51397 102 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SGSHP51688 502 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CASP6P55212 293 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MAZP56270 477 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 RAC1P63000 192 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RPL38P63173 70 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 PSPHP78330 225 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CTAG1AP78358 180 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 NKX6-1P78426 367 aaPredicted RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 TIAL1Q01085 375 aaKnown RBP eCLIP3.9□□□□□ -1.79
LIG3-211ENST00000588713 MC2RQ01718 297 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SCN1BQ07699 218 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 EFEMP1Q12805 493 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 FAPQ12884 760 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 HYAL2Q12891 473 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ABRQ12979 859 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 BAMBIQ13145 260 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SLAMF1Q13291 335 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 EFR3AQ14156 821 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 GBX1Q14549 363 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 QPRTQ15274 297 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PCBP2Q15366 365 aaKnown RBP eCLIP3.9□□□□□ -1.79
LIG3-211ENST00000588713 TSNQ15631 228 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 CARTPTQ16568 116 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MAPKAPK3Q16644 382 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SWI5Q1ZZU3 235 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 PIP5KL1Q5T9C9 394 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CACHD1Q5VU97 1274 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 FAM46CQ5VWP2 391 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SYPL2Q5VXT5 272 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 NXNL2Q5VZ03 156 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 LRRC66Q68CR7 880 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 METTL2BQ6P1Q9 378 aaKnown RBP3.9□□□□□ -1.79
LIG3-211ENST00000588713 C20orf204Q6ZNR8 217 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SPATC1Q76KD6 591 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 BHLHA9Q7RTU4 235 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CAMKMTQ7Z624 323 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 NRARPQ7Z6K4 114 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TECPR1Q7Z6L1 1165 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 SERPINA11Q86U17 422 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TAC4Q86UU9 113 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CYP4Z1Q86W10 505 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 KRTAP1-3Q8IUG1 177 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 GRAMD2AQ8IUY3 354 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 FAM20CQ8IXL6 584 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 MSRB3Q8IXL7 192 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 OR8H2Q8N162 312 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TCAIMQ8N3R3 496 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 CPXM2Q8N436 756 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 ZADH2Q8N4Q0 377 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 TEX26Q8N6G2 289 aa3.9□□□□□ -1.79
LIG3-211ENST00000588713 RTL3Q8N8U3 475 aaKnown RBP3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms