RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 SNRPB2P08579 225 aaKnown RBP18.65■□□□□ 0.58
SS18-224ENST00000584083 GABRA1P14867 456 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 DDX5P17844 614 aaKnown RBP18.65■□□□□ 0.58
SS18-224ENST00000584083 PTPN6P29350 595 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 CHRNB4P30926 498 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 HPCAL1P37235 193 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 PNLIPRP2P54317 469 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 MANFP55145 182 aaKnown RBP18.65■□□□□ 0.58
SS18-224ENST00000584083 PSG6Q00889 435 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 C1orf185Q5T7R7 199 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 R3HCC1LQ7Z5L2 792 aaKnown RBP18.65■□□□□ 0.58
SS18-224ENST00000584083 WDR53Q7Z5U6 358 aaPredicted RBP18.65■□□□□ 0.58
SS18-224ENST00000584083 CCDC71Q8IV32 467 aaPredicted RBP18.65■□□□□ 0.58
SS18-224ENST00000584083 TUBGCP3Q96CW5 907 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 MTERF3Q96E29 417 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 TTYH2Q9BSA4 534 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 SERHLQ9NQF3 203 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 SLC6A5Q9Y345 797 aa18.65■□□□□ 0.58
SS18-224ENST00000584083 PKDREJQ9NTG1 2253 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 ERLIN1O75477 346 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 HOXD4P09016 255 aaPredicted RBP18.64■□□□□ 0.57
SS18-224ENST00000584083 GLI4P10075 376 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 COX6B1P14854 86 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 ABCE1P61221 599 aaKnown RBP18.64■□□□□ 0.57
SS18-224ENST00000584083 PDE7AQ13946 482 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 CYP27C1Q4G0S4 372 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 EIPR1Q53HC9 387 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 TNFAIP8L3Q5GJ75 292 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 WIPI1Q5MNZ9 446 aaPredicted RBP18.64■□□□□ 0.57
SS18-224ENST00000584083 C6orf136Q5SQH8 315 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 CES4AQ5XG92 561 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 RTL6Q6ICC9 239 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 LRIG3Q6UXM1 1119 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 SZRD1Q7Z422 152 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 YRDCQ86U90 279 aaKnown RBP18.64■□□□□ 0.57
SS18-224ENST00000584083 FNDC5Q8NAU1 212 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 PGM2Q96G03 612 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 PAIP2Q9BPZ3 127 aaKnown RBP18.64■□□□□ 0.57
SS18-224ENST00000584083 C1orf50Q9BV19 199 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 ZNF395Q9H8N7 513 aaPredicted RBP18.64■□□□□ 0.57
SS18-224ENST00000584083 Q9N2J8 555 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 EQTNQ9NQ60 294 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 FAM215AQ9Y5M1 114 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 ACTL7BQ9Y614 415 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 NOTCH2Q04721 2471 aa18.64■□□□□ 0.57
SS18-224ENST00000584083 ITPR2Q14571 2701 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 PSMG1O95456 288 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 IFI6P09912 130 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 PRPS2P11908 318 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 EFNA1P20827 205 aaPredicted RBP18.63■□□□□ 0.57
SS18-224ENST00000584083 RPL3P39023 403 aaKnown RBP18.63■□□□□ 0.57
SS18-224ENST00000584083 PRKAG1P54619 331 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 GAB1Q13480 694 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 MPP2Q14168 576 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 DECR1Q16698 335 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 IL23RQ5VWK5 629 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 FAM83FQ8NEG4 500 aaPredicted RBP18.63■□□□□ 0.57
SS18-224ENST00000584083 LILRB4Q8NHJ6 448 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 C3orf14Q9HBI5 128 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 ACSS1Q9NUB1 689 aaPredicted RBP18.63■□□□□ 0.57
SS18-224ENST00000584083 MRTO4Q9UKD2 239 aaKnown RBP18.63■□□□□ 0.57
SS18-224ENST00000584083 CBLCQ9ULV8 474 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 WIF1Q9Y5W5 379 aa18.63■□□□□ 0.57
SS18-224ENST00000584083 NBPF19A0A087WUL8 3843 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 FAM90A27PA6NNH2 459 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 C19orf84I3L1E1 186 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 SCAMP2O15127 329 aaKnown RBP18.62■□□□□ 0.57
SS18-224ENST00000584083 CBR3O75828 277 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 DHRS4L1P0CG22 281 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 CYP4B1P13584 511 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 BGNP21810 368 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 GRK2P25098 689 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 GABRA3P34903 492 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 GCKP35557 465 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 RFX3P48380 749 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 SLC1A6P48664 564 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 CRYZQ08257 329 aaKnown RBP18.62■□□□□ 0.57
SS18-224ENST00000584083 PDCD2Q16342 344 aaPredicted RBP18.62■□□□□ 0.57
SS18-224ENST00000584083 PLCZ1Q86YW0 608 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 ULK2Q8IYT8 1036 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 ZNF781Q8N8C0 355 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 ANKRD42Q8N9B4 389 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 WDSUB1Q8N9V3 476 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 OR7A2PQ8NGA2 310 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 CEP70Q8NHQ1 597 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 PPP1R36Q96LQ0 422 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 TIMP4Q99727 224 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 LMF2Q9BU23 707 aaKnown RBP18.62■□□□□ 0.57
SS18-224ENST00000584083 ATP6V1HQ9UI12 483 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 CAMK2AQ9UQM7 478 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 EIF3LQ9Y262 564 aaKnown RBP18.62■□□□□ 0.57
SS18-224ENST00000584083 PCDHGB3Q9Y5G1 929 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 NUP214P35658 2090 aaPredicted RBP18.62■□□□□ 0.57
SS18-224ENST00000584083 MED12Q93074 2177 aa18.62■□□□□ 0.57
SS18-224ENST00000584083 HCFC1P51610 2035 aa18.61■□□□□ 0.57
SS18-224ENST00000584083 TTC36A6NLP5 189 aa18.61■□□□□ 0.57
SS18-224ENST00000584083 SCO2O43819 266 aa18.61■□□□□ 0.57
SS18-224ENST00000584083 PTGER4P35408 488 aa18.61■□□□□ 0.57
SS18-224ENST00000584083 FRKP42685 505 aaPredicted RBP18.61■□□□□ 0.57
SS18-224ENST00000584083 STX3Q13277 289 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms