RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GPATCH1Q9BRR8 931 aaKnown RBP18.61■□□□□ 0.57
SHMT1-209ENST00000582653 CXXC4Q9H2H0 198 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 CLEC4MQ9H2X3 399 aaPredicted RBP18.61■□□□□ 0.57
SHMT1-209ENST00000582653 MYNNQ9NPC7 610 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 MIEF1Q9NQG6 463 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 RRAGDQ9NQL2 400 aaPredicted RBP18.61■□□□□ 0.57
SHMT1-209ENST00000582653 TAS2R9Q9NYW1 312 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 FBXL2Q9UKC9 423 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 EDARQ9UNE0 448 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 CCL27Q9Y4X3 112 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 C17orf51A8MQB3 221 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 RSL1D1O76021 490 aaKnown RBP18.6■□□□□ 0.57
SHMT1-209ENST00000582653 UROSP10746 265 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 IL12BP29460 328 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 GCKP35557 465 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 KRT20P35900 424 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 NAA20P61599 178 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 PSG6Q00889 435 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 RCAN2Q14206 197 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 SH2D4BQ5SQS7 431 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 TMEM107Q6UX40 140 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 PLXDC2Q6UX71 529 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 KIF18BQ86Y91 864 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 PLCZ1Q86YW0 608 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 C10orf107Q8IVU9 208 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 TRIM42Q8IWZ5 723 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 OR2W6PQ8NHA6 318 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 OR2B2Q9GZK3 357 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 LIME1Q9H400 295 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 GLIPR2Q9H4G4 154 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 L2HGDHQ9H9P8 463 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 CCM2LQ9NUG4 571 aaPredicted RBP18.6■□□□□ 0.57
SHMT1-209ENST00000582653 TAS2R7Q9NYW3 318 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 JKAMPQ9P055 326 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 ST6GALNAC2Q9UJ37 374 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 OR10H1Q9Y4A9 318 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 WIF1Q9Y5W5 379 aa18.6■□□□□ 0.57
SHMT1-209ENST00000582653 TLDC2A0PJX2 215 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 A6NNC1 897 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 B4DXG7 233 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 H3BQF6 201 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 ABCB7O75027 752 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 SEC22BO75396 215 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 EPXP11678 715 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 TCEA1P23193 301 aaKnown RBP18.59■□□□□ 0.57
SHMT1-209ENST00000582653 TACR1P25103 407 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 STARP49675 285 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 PNLIPRP2P54317 469 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 SRYQ05066 204 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 SLC18A2Q05940 514 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 ZNF155Q12901 538 aaPredicted RBP18.59■□□□□ 0.57
SHMT1-209ENST00000582653 EFR3AQ14156 821 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 KIAA0040Q15053 153 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 LIPMQ5VYY2 423 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 GOT1L1Q8NHS2 421 aaPredicted RBP18.59■□□□□ 0.57
SHMT1-209ENST00000582653 FAM76AQ8TAV0 307 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 GFM2Q969S9 779 aaKnown RBP18.59■□□□□ 0.57
SHMT1-209ENST00000582653 UCN2Q96RP3 112 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 GATA5Q9BWX5 397 aaPredicted RBP18.59■□□□□ 0.57
SHMT1-209ENST00000582653 STMN4Q9H169 189 aaPredicted RBP18.59■□□□□ 0.57
SHMT1-209ENST00000582653 PPCSQ9HAB8 311 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 TAS2R10Q9NYW0 307 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 MRPS18CQ9Y3D5 142 aaKnown RBP18.59■□□□□ 0.57
SHMT1-209ENST00000582653 FIS1Q9Y3D6 152 aa18.59■□□□□ 0.57
SHMT1-209ENST00000582653 A0A087WV62 115 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 UPK1AO00322 258 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 CYP4B1P13584 511 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 GAS1P54826 345 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 PSPHP78330 225 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 PCLAFQ15004 111 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 ENPP6Q6UWR7 440 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 CDC20BQ86Y33 519 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 C9orf106Q8NAJ2 232 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 AMDHD1Q96NU7 426 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 TUBA1CQ9BQE3 449 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 TMUB1Q9BVT8 246 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 ANKZF1Q9H8Y5 726 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 FLRT3Q9NZU0 649 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 CBLCQ9ULV8 474 aa18.58■□□□□ 0.56
SHMT1-209ENST00000582653 C19orf53Q9UNZ5 99 aaPredicted RBP18.58■□□□□ 0.56
SHMT1-209ENST00000582653 TUBAL3A6NHL2 446 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 PLOD2O00469 737 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 COQ9O75208 318 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 RCBTB2O95199 551 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 GRK2P25098 689 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 GFRA1P56159 465 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 GAB1Q13480 694 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 ANKRD26P1Q6NSI1 321 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 Q6ZSR9 355 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 ADGRE4PQ86SQ3 457 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 IFNEQ86WN2 208 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 OR2T11Q8NH01 316 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 RNF138Q8WVD3 245 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 ELP4Q96EB1 424 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 RMND5BQ96G75 393 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-209ENST00000582653 TUBB1Q9H4B7 451 aa18.57■□□□□ 0.56
SHMT1-209ENST00000582653 DDX18Q9NVP1 670 aaKnown RBP18.57■□□□□ 0.56
SHMT1-209ENST00000582653 RPH3AQ9Y2J0 694 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-209ENST00000582653 ZNF469Q96JG9 3925 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-209ENST00000582653 H0Y3Z8 333 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms