RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FAM111BQ6SJ93 734 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 USP30Q70CQ3 517 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 PRICKLE2Q7Z3G6 844 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MRGPREQ86SM8 312 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TRIM69Q86WT6 500 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TMEM151BQ8IW70 566 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 LRRC25Q8N386 305 aaPredicted RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 OR7G2Q8NG99 324 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 OR52I1Q8NGK6 324 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 GNPDA2Q8TDQ7 276 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 ADAMTS15Q8TE58 950 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TSACCQ96A04 125 aaPredicted RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 SLC35A4Q96G79 324 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 SMIM10Q96HG1 83 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 OR2A5Q96R48 311 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 PLA2G12AQ9BZM1 189 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 ANKRD19PQ9H560 264 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 SP140LQ9H930 580 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TMEM165Q9HC07 324 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 KCMF1Q9P0J7 381 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 SEC14L4Q9UDX3 406 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 NCKAP1Q9Y2A7 1128 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MDC1Q14676 2089 aaKnown RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 ATG2BQ96BY7 2078 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TRBV23OR9-2A0A075B6M9 112 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 A0A075B6Q4 140 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TNFSF14O43557 240 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 FCMRO60667 390 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MED26O95402 600 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MAGP20916 626 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 CPN2P22792 545 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 PSMA1P25786 263 aaKnown RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 CTHP32929 405 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TRHRP34981 398 aaPredicted RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 ACTR1BP42025 376 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 CRYBB2P43320 205 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 PDX1P52945 283 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 GAS1P54826 345 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 ACTR1AP61163 376 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 ST3GAL3Q11203 375 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 CDC20Q12834 499 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TSPAN31Q12999 210 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MLLT11Q13015 90 aaPredicted RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 KIR2DS3Q14952 304 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 SUZ12Q15022 739 aaKnown RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 FAM214AQ32MH5 1076 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 STEAP3Q658P3 488 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MFSD12Q6NUT3 480 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 PAQR6Q6TCH4 344 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MEX3DQ86XN8 651 aaKnown RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 CADM3Q8N126 398 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 OR52P1PQ8NH57 321 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 LILRB1Q8NHL6 650 aaPredicted RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 ITPKCQ96DU7 683 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MS4A4EQ96PG1 132 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 OR2A14Q96R47 310 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 CNPPD1Q9BV87 410 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 POLR2J2Q9GZM3 115 aaKnown RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 NUAK2Q9H093 628 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TMEM168Q9H0V1 697 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 S1PR5Q9H228 398 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 EGLN3Q9H6Z9 239 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 MRPS18AQ9NVS2 196 aaKnown RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 NDUFB11Q9NX14 153 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 PHF11Q9UIL8 331 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 GSAPA4D1B5 854 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 CPSF4LA6NMK7 179 aaKnown RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 FAM170BA6NMN3 283 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 MYL12BO14950 172 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 CTSVO60911 334 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 RAB36O95755 333 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 CCNYL3P0C7X3 344 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 OMPP47874 163 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 C1DQ13901 141 aaKnown RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 KLHL22Q53GT1 634 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 PRRT3Q5FWE3 981 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 CDC73Q6P1J9 531 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 SLC27A4Q6P1M0 643 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 RASSF6Q6ZTQ3 369 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 SLC16A11Q8NCK7 471 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 OR8D4Q8NGM9 314 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 TEX47Q8TBZ9 253 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 TMEM163Q8TC26 289 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 ASPNQ9BXN1 380 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 SAP130Q9H0E3 1048 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 TRIM45Q9H8W5 580 aaPredicted RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 CPNE5Q9HCH3 593 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 EXOSC4Q9NPD3 245 aaKnown RBP9.43□□□□□ -0.9
VPS53-220ENST00000576149 CD93Q9NPY3 652 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 KLHL28Q9NXS3 571 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 CLEC1BQ9P126 229 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 STUB1Q9UNE7 303 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 PNMA8CA0A1B0GUJ8 204 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 TNFRSF10CO14798 259 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 P2RX6O15547 441 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 PRODHO43272 600 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 UBXN7O94888 489 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 AGR2O95994 175 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 UGT2B7P16662 529 aa9.43□□□□□ -0.9
VPS53-220ENST00000576149 IFNA8P32881 189 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms