RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GRK2P25098 689 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 EIF1AXP47813 144 aaKnown RBP14.22□□□□□ -0.13
VPS53-218ENST00000575207 CCNIQ14094 377 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 SLBPQ14493 270 aaKnown RBP eCLIP14.22□□□□□ -0.13
VPS53-218ENST00000575207 P2RY8Q86VZ1 359 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 TDRPQ86YL5 185 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 SRFBP1Q8NEF9 429 aaKnown RBP14.22□□□□□ -0.13
VPS53-218ENST00000575207 ADCY4Q8NFM4 1077 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 OR52B6Q8NGF0 335 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 TMCO6Q96DC7 493 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 IQCDQ96DY2 449 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 LRRC37BQ96QE4 947 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 C1QTNF5Q9BXJ0 243 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 ZMAT3Q9HA38 289 aaKnown RBP14.22□□□□□ -0.13
VPS53-218ENST00000575207 FBXO6Q9NRD1 293 aaPredicted RBP14.22□□□□□ -0.13
VPS53-218ENST00000575207 RAB6BQ9NRW1 208 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 PAQR5Q9NXK6 330 aaPredicted RBP14.22□□□□□ -0.13
VPS53-218ENST00000575207 BFARQ9NZS9 450 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 MSMBP08118 114 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 SLC35E2BP0CK96 405 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 SLC35E2P0CK97 266 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 PGCP20142 388 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 CTNNA1P35221 906 aaKnown RBP14.21□□□□□ -0.13
VPS53-218ENST00000575207 SRSF4Q08170 494 aaKnown RBP14.21□□□□□ -0.13
VPS53-218ENST00000575207 PLCXD2Q0VAA5 305 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 TRIP10Q15642 601 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 NNATQ16517 81 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 KPRPQ5T749 579 aaPredicted RBP14.21□□□□□ -0.13
VPS53-218ENST00000575207 AADACL2Q6P093 401 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 FAHD2BQ6P2I3 314 aaPredicted RBP14.21□□□□□ -0.13
VPS53-218ENST00000575207 SASS6Q6UVJ0 657 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 SLCO4C1Q6ZQN7 724 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 C1QL2Q7Z5L3 287 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 KRT78Q8N1N4 520 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 FADS6Q8N9I5 356 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 OR4K17Q8NGC6 315 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 RNF138Q8WVD3 245 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 UBE2FQ969M7 185 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 LRRC58Q96CX6 371 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 FAHD2AQ96GK7 314 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 PITHD1Q9GZP4 211 aaPredicted RBP14.21□□□□□ -0.13
VPS53-218ENST00000575207 ZBTB26Q9HCK0 441 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 MYNNQ9NPC7 610 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 GPRC5BQ9NZH0 403 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 EHD3Q9NZN3 535 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 MMP24Q9Y5R2 645 aa14.21□□□□□ -0.13
VPS53-218ENST00000575207 HEATR1Q9H583 2144 aaKnown RBP14.21□□□□□ -0.13
VPS53-218ENST00000575207 ZNF814B7Z6K7 855 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 RTCAO00442 366 aaKnown RBP14.2□□□□□ -0.14
VPS53-218ENST00000575207 ACOX3O15254 700 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 PGM3O95394 542 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 PNPP00491 289 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 GYPCP04921 128 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 GNAZP19086 355 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 MDKP21741 143 aaPredicted RBP14.2□□□□□ -0.14
VPS53-218ENST00000575207 MGAT1P26572 445 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 CETN2P41208 172 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 NPY2RP49146 381 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 KHKP50053 298 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 GAS1P54826 345 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 HADHBP55084 474 aaKnown RBP14.2□□□□□ -0.14
VPS53-218ENST00000575207 TUSC1Q2TAM9 212 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 C18orf63Q68DL7 685 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 GTF2IRD2BQ6EKJ0 949 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 ADNP2Q6IQ32 1131 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 RBM43Q6ZSC3 357 aaKnown RBP14.2□□□□□ -0.14
VPS53-218ENST00000575207 NUFIP2Q7Z417 695 aaKnown RBP14.2□□□□□ -0.14
VPS53-218ENST00000575207 GTF2IRD2Q86UP8 949 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 DENND6AQ8IWF6 608 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 SPATA6LQ8N4H0 392 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 OR5M1Q8NGP8 315 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 OR10D3Q8NH80 312 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 SLC35B2Q8TB61 432 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 ADGRG7Q96K78 797 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 CITED1Q99966 193 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 RBM4BQ9BQ04 359 aaKnown RBP14.2□□□□□ -0.14
VPS53-218ENST00000575207 KLHL21Q9UJP4 597 aa14.2□□□□□ -0.14
VPS53-218ENST00000575207 DNAH3Q8TD57 4116 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 DNAH9Q9NYC9 4486 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 OR6C70A6NIJ9 312 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 EIF1AYO14602 144 aaKnown RBP14.19□□□□□ -0.14
VPS53-218ENST00000575207 TIMM23O14925 209 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 LYZL6O75951 148 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 PTMAP06454 111 aaKnown RBP14.19□□□□□ -0.14
VPS53-218ENST00000575207 CT62P0C5K7 136 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 RIN1Q13671 783 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 GANABQ14697 944 aaKnown RBP14.19□□□□□ -0.14
VPS53-218ENST00000575207 Q6ZT83 130 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 GALNT10Q86SR1 603 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 LUZP1Q86V48 1076 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 OR7G1Q8NGA0 311 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 OR2W6PQ8NHA6 318 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 WFDC12Q8WWY7 111 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 FBXO17Q96EF6 278 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 LINGO1Q96FE5 620 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 VRK1Q99986 396 aaPredicted RBP14.19□□□□□ -0.14
VPS53-218ENST00000575207 PCDHB14Q9Y5E9 798 aa14.19□□□□□ -0.14
VPS53-218ENST00000575207 GOLGA6L10A0A0M3HER8 536 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 WASHC1A8K0Z3 465 aa14.18□□□□□ -0.14
VPS53-218ENST00000575207 PRKRAO75569 313 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms