RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 VTCN1Q7Z7D3 282 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 SLITRK4Q8IW52 837 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 SLC44A2Q8IWA5 706 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 OR4N5Q8IXE1 308 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 KBTBD2Q8IY47 623 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 TAGAPQ8N103 731 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ZNF619Q8N2I2 560 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 COX18Q8N8Q8 333 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ATG16L2Q8NAA4 619 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 MORN4Q8NDC4 146 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 OR1L3Q8NH93 324 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 OR14A16Q8NHC5 309 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 RHBDD1Q8TEB9 315 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 GIPC3Q8TF64 312 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 PHF10Q8WUB8 498 aaKnown RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 SLC9A6Q92581 669 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 KAT2AQ92830 837 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 GATA6Q92908 595 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 RAB8BQ92930 207 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 UCN3Q969E3 161 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 OTUB1Q96FW1 271 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 ZNF570Q96NI8 536 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 PTCHD1Q96NR3 888 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 SLC29A1Q99808 456 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 APOL4Q9BPW4 351 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 NUDT22Q9BRQ3 303 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ADI1Q9BV57 179 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ARRDC1-AS1Q9H2J1 176 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ADAP2Q9NPF8 381 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 PNPLA3Q9NST1 481 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 NDUFA13Q9P0J0 144 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 HCN3Q9P1Z3 774 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 KIF17Q9P2E2 1029 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 FTSJ1Q9UET6 329 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 C19orf25Q9UFG5 118 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 GDF2Q9UK05 429 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 BLOC1S6Q9UL45 172 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 CLCA3PQ9Y6N3 262 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 DSPPQ9NZW4 1301 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 CFAP47Q6ZTR5 3102 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 LY6G6EA0A0G2JKS1 128 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 A0A1W2PQM1 296 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 A0A1W2PRQ8 180 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 FAM227AF5H4B4 570 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 FAAHO00519 579 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 AP3D1O14617 1153 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 POLR1CO15160 346 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 SLC16A6O15403 523 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 HCRTR1O43613 425 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 FMO6PO60774 539 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 SCRG1O75711 98 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 CCNB2O95067 398 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 H6PDO95479 791 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 IL2RAP01589 272 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 KLK3P07288 261 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 ITGAMP11215 1152 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 IL7RP16871 459 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 CD247P20963 164 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 DRD5P21918 477 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 MYF6P23409 242 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 IGFBP5P24593 272 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 CCKBRP32239 447 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 TPD52P55327 224 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 VLDLRP98155 873 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZFP36L1Q07352 338 aaKnown RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 ST3GAL3Q11203 375 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZNF155Q12901 538 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 EIF3IQ13347 325 aaKnown RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 DGCR6Q14129 220 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 KEAP1Q14145 624 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 LTB4RQ15722 352 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 SYPL1Q16563 259 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 NKG7Q16617 165 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 DUSP7Q16829 419 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZNF750Q32MQ0 723 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 TRMT12Q53H54 448 aaKnown RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 PERM1Q5SV97 790 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 DCST1Q5T197 706 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 DCST2Q5T1A1 773 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 RNF220Q5VTB9 566 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 MLIPQ5VWP3 458 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 FAM180BQ6P0A1 224 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZNF574Q6ZN55 896 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 C1orf229Q6ZS94 237 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 RRM2BQ7LG56 351 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 OVCH1Q7RTY7 1134 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 RANBP3LQ86VV4 465 aaPredicted RBP7.42□□□□□ -1.22
VPS39-213ENST00000570062 EPHX4Q8IUS5 362 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 TMEM151BQ8IW70 566 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZNF440Q8IYI8 595 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 FAM86B1Q8N7N1 296 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 ZNF527Q8NB42 609 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 C17orf47Q8NEP4 570 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 OR52R1Q8NGF1 315 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 OR5D16Q8NGK9 328 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 OR52P1PQ8NH57 321 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 GPR151Q8TDV0 419 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 EDARADDQ8WWZ3 215 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 METTL21AQ8WXB1 218 aa7.42□□□□□ -1.22
VPS39-213ENST00000570062 CLIP3Q96DZ5 547 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms