RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 STARP49675 285 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 PKNOX1P55347 436 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 PPP2R2AP63151 447 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 EEF1A1P68104 462 aaKnown RBP15.52■□□□□ 0.08
CLN3-216ENST00000565316 SRYQ05066 204 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 ACSM2AQ08AH3 577 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 GAB1Q13480 694 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 BCL2A1Q16548 175 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 EEF1A1P5Q5VTE0 462 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 ACSM2BQ68CK6 577 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 SCIMPQ6UWF3 145 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 SLC22A9Q8IVM8 553 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 OR7G2Q8NG99 324 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 INTS12Q96CB8 462 aaKnown RBP15.52■□□□□ 0.08
CLN3-216ENST00000565316 RBM24Q9BX46 236 aaKnown RBP15.52■□□□□ 0.08
CLN3-216ENST00000565316 STMN4Q9H169 189 aaPredicted RBP15.52■□□□□ 0.08
CLN3-216ENST00000565316 ACBD3Q9H3P7 528 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 PIGMQ9H3S5 423 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 GIMAP4Q9NUV9 329 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 NAV3Q8IVL0 2385 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 PLOD2O00469 737 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 HCRTR2O43614 444 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 DIAPH2O60879 1101 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 FOSL1P15407 271 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 GRK2P25098 689 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 MPIP34949 423 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 B3GALT5-AS1P59052 145 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 MRPS22P82650 360 aaKnown RBP15.51■□□□□ 0.07
CLN3-216ENST00000565316 FOXD4Q12950 439 aaPredicted RBP15.51■□□□□ 0.07
CLN3-216ENST00000565316 TRMT10CQ7L0Y3 403 aaKnown RBP15.51■□□□□ 0.07
CLN3-216ENST00000565316 FAM9CQ8IZT9 166 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 ACMSDQ8TDX5 336 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 SFXN2Q96NB2 322 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 GALNT8Q9NY28 637 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 TAS2R9Q9NYW1 312 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 NFU1Q9UMS0 254 aa15.51■□□□□ 0.07
CLN3-216ENST00000565316 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 CCDC151A5D8V7 595 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 A8MXE2 369 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 MYO1GB0I1T2 1018 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 TNFSF13O75888 250 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 HRGP04196 525 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 GSTA1P08263 222 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 ANXA4P09525 319 aaPredicted RBP15.5■□□□□ 0.07
CLN3-216ENST00000565316 DDCP20711 480 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 DPP4P27487 766 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 IL12BP29460 328 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 KRT20P35900 424 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 PCYT1AP49585 367 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 ADAM8P78325 824 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 PRSS53Q2L4Q9 553 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 OR5M10Q6IEU7 315 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 PLXDC2Q6UX71 529 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 SLC44A2Q8IWA5 706 aaPredicted RBP15.5■□□□□ 0.07
CLN3-216ENST00000565316 FADS6Q8N9I5 356 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 OR4N2Q8NGD1 307 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLN3-216ENST00000565316 KCNA7Q96RP8 456 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 YIPF4Q9BSR8 244 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 GSTO2Q9H4Y5 243 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 TAS2R7Q9NYW3 318 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 RPH3AQ9Y2J0 694 aaPredicted RBP15.5■□□□□ 0.07
CLN3-216ENST00000565316 TIMM22Q9Y584 194 aa15.5■□□□□ 0.07
CLN3-216ENST00000565316 A0A087WV62 115 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 RIPK2O43353 540 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 SLITRK5O94991 958 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 TGM6O95932 706 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 CRHP06850 196 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 DSCR4P56555 118 aaPredicted RBP15.49■□□□□ 0.07
CLN3-216ENST00000565316 PSG6Q00889 435 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 DEFB113Q30KQ7 82 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 CYP27C1Q4G0S4 372 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 LUZP2Q86TE4 346 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 GCNT2Q8N0V5 402 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 CNPY4Q8N129 248 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 SMPDL3BQ92485 455 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 EFHD2Q96C19 240 aaPredicted RBP15.49■□□□□ 0.07
CLN3-216ENST00000565316 BBS4Q96RK4 519 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 EBPLQ9BY08 206 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 DKKL1Q9UK85 242 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 PACSIN3Q9UKS6 424 aa15.49■□□□□ 0.07
CLN3-216ENST00000565316 C19orf53Q9UNZ5 99 aaPredicted RBP15.49■□□□□ 0.07
CLN3-216ENST00000565316 WBP11Q9Y2W2 641 aaKnown RBP15.49■□□□□ 0.07
CLN3-216ENST00000565316 MED12LQ86YW9 2145 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 A0A1W2PNV4 684 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 A0A1W2PPR1 153 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 SH3D21A4FU49 640 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 C17orf51A8MQB3 221 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 UBFD1O14562 309 aaKnown RBP15.48■□□□□ 0.07
CLN3-216ENST00000565316 FADS1O60427 444 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 COQ9O75208 318 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 PSMG1O95456 288 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 HOXB4P17483 251 aaPredicted RBP15.48■□□□□ 0.07
CLN3-216ENST00000565316 EVI2BP34910 448 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 CPA2P48052 419 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 DIO3P55073 304 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 BTKQ06187 659 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 ZNF763Q0D2J5 394 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 KEAP1Q14145 624 aa15.48■□□□□ 0.07
CLN3-216ENST00000565316 FBXW10Q5XX13 1052 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms