RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 A0A1B0GVC2 190 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 A0A1B0GVI7 797 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 TRABD2BA6NFA1 517 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 A6NIN4 97 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 GABRR3A8MPY1 467 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 MPTX1A8MV57 137 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 RFXANKO14593 260 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 SSNA1O43805 119 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 EIF3GO75821 320 aaKnown RBP eCLIP12.52□□□□□ -0.4
CLK3-206ENST00000562078 LRATO95237 230 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 SIX6O95475 246 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 NUDT7P0C024 238 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 SULT1A3P0DMM9 295 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 SULT1A4P0DMN0 295 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 PIPP12273 146 aaPredicted RBP12.52□□□□□ -0.4
CLK3-206ENST00000562078 ENGP17813 658 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 CXCL2P19875 107 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 DGKAP23743 735 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 OR1E2P47887 323 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 HSPA7P48741 367 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 MAZP56270 477 aaKnown RBP12.52□□□□□ -0.4
CLK3-206ENST00000562078 SPIBQ01892 262 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 PTSQ03393 145 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 GTF2H2Q13888 395 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 FGL2Q14314 439 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 SWI5Q1ZZU3 235 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 GPRC6AQ5T6X5 926 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 GTF2H2CQ6P1K8 395 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 MACC1Q6ZN28 852 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 LAS2Q8IYD9 372 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 CBARPQ8N350 705 aaPredicted RBP12.52□□□□□ -0.4
CLK3-206ENST00000562078 ZNF454Q8N9F8 522 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 UXS1Q8NBZ7 420 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 OR2M2Q96R28 347 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 CDCA3Q99618 268 aaPredicted RBP12.52□□□□□ -0.4
CLK3-206ENST00000562078 EGFL8Q99944 293 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 SLC25A19Q9HC21 320 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 SPHK2Q9NRA0 654 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 ELOVL2Q9NXB9 296 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 B4GALT6Q9UBX8 382 aa12.52□□□□□ -0.4
CLK3-206ENST00000562078 LRRC72A6NJI9 287 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 ANXA2P2A6NMY6 339 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 POP4O95707 220 aaKnown RBP12.52□□□□□ -0.41
CLK3-206ENST00000562078 ALDOBP05062 364 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 ACAA1P09110 424 aaPredicted RBP12.52□□□□□ -0.41
CLK3-206ENST00000562078 BCKDHAP12694 445 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 ANXA8P13928 327 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 RAB3BP20337 219 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 RAB8AP61006 207 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 PCBP2Q15366 365 aaKnown RBP eCLIP12.52□□□□□ -0.41
CLK3-206ENST00000562078 FAM198BQ6UWH4 519 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 B3GLCTQ6Y288 498 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 SORCS1Q8WY21 1168 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 MED18Q9BUE0 208 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 CPEB1Q9BZB8 566 aaKnown RBP12.52□□□□□ -0.41
CLK3-206ENST00000562078 CHIAQ9BZP6 476 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 SAP130Q9H0E3 1048 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 BRD9Q9H8M2 597 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 BIN3Q9NQY0 253 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 LATS2Q9NRM7 1088 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 SLC22A11Q9NSA0 550 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 DZANK1Q9NVP4 752 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 NLGN3Q9NZ94 848 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 CD84Q9UIB8 345 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 CLCA2Q9UQC9 943 aa12.52□□□□□ -0.41
CLK3-206ENST00000562078 CLIC1O00299 241 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 RGS14O43566 566 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 C1SP09871 688 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ZNF77Q15935 545 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 C4orf46Q504U0 113 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 TCTE1Q5JU00 501 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ATAT1Q5SQI0 421 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 TMEM215Q68D42 235 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 RAET1GQ6H3X3 334 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 TMEM88Q6PEY1 159 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 MBOAT1Q6ZNC8 495 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ZER1Q7Z7L7 766 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ADIPOR2Q86V24 386 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 OR4C15Q8NGM1 316 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 C2CD4CQ8TF44 421 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 CYB5D2Q8WUJ1 264 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 CNOT9Q92600 299 aaKnown RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 ELMOD3Q96FG2 381 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 THAP7Q9BT49 309 aaPredicted RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 NLNQ9BYT8 704 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 NKX6-2Q9C056 277 aaPredicted RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 IPPKQ9H8X2 491 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 NDRG3Q9UGV2 375 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 ING1Q9UK53 422 aaPredicted RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 PPT2Q9UMR5 302 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 DLGAP4Q9Y2H0 992 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 RPH3AQ9Y2J0 694 aaPredicted RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 KCNK7Q9Y2U2 307 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 OARD1Q9Y530 152 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 SLC22A7Q9Y694 548 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 AGAP14A8MT82 685 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 TMEM229AB2RXF0 380 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 SUV39H1O43463 412 aa12.51□□□□□ -0.41
CLK3-206ENST00000562078 EIF1BO60739 113 aaKnown RBP12.51□□□□□ -0.41
CLK3-206ENST00000562078 OPN1SWP03999 348 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms