RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MBD3L4A6NDZ8 208 aaPredicted RBP17.24■□□□□ 0.35
VPS35-202ENST00000561713 MBD3L3A6NE82 208 aaPredicted RBP17.24■□□□□ 0.35
VPS35-202ENST00000561713 MBD3L5A6NJ08 208 aaPredicted RBP17.24■□□□□ 0.35
VPS35-202ENST00000561713 TO15178 435 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 SHBGP04278 402 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 JUNP05412 331 aaKnown RBP17.24■□□□□ 0.35
VPS35-202ENST00000561713 ANXA4P09525 319 aaPredicted RBP17.24■□□□□ 0.35
VPS35-202ENST00000561713 DRD5P21918 477 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 IL12BP29460 328 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 MC3RP41968 323 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 STARP49675 285 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 PKNOX1P55347 436 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 DCAF7P61962 342 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 FOXF2Q12947 444 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 SPDYAQ5MJ70 313 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 SH2D4BQ5SQS7 431 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 TMEM81Q6P7N7 255 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 CEP112Q8N8E3 955 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 GBP7Q8N8V2 638 aaPredicted RBP17.24■□□□□ 0.35
VPS35-202ENST00000561713 MBD3L2Q8NHZ7 208 aaPredicted RBP17.24■□□□□ 0.35
VPS35-202ENST00000561713 NEUROD4Q9HD90 331 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 FLRT3Q9NZU0 649 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 PTGDR2Q9Y5Y4 395 aa17.24■□□□□ 0.35
VPS35-202ENST00000561713 OR6C70A6NIJ9 312 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 CD8B2A6NJW9 211 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 CLCA1A8K7I4 914 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 G3V2L1 256 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 SCO2O43819 266 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 TSPAN2O60636 221 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 MYL2P10916 166 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 CYP4B1P13584 511 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 CD53P19397 219 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 ZNF763Q0D2J5 394 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 RCAN2Q14206 197 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 POU4F3Q15319 338 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 TMEM107Q6UX40 140 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 ZYG11AQ6WRX3 759 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 LARP4Q71RC2 724 aaKnown RBP eCLIP17.23■□□□□ 0.35
VPS35-202ENST00000561713 LCA5Q86VQ0 697 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 IFNEQ86WN2 208 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 SLC44A2Q8IWA5 706 aaPredicted RBP17.23■□□□□ 0.35
VPS35-202ENST00000561713 TRIM42Q8IWZ5 723 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 GCNT2Q8N0V5 402 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 KIF18AQ8NI77 898 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 ACMSDQ8TDX5 336 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 ARSGQ96EG1 525 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 C11orf24Q96F05 449 aaPredicted RBP17.23■□□□□ 0.35
VPS35-202ENST00000561713 SLC35A4Q96G79 324 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 BBS4Q96RK4 519 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 YIPF4Q9BSR8 244 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 G6PC3Q9BUM1 346 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 DKKL1Q9UK85 242 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 EXO1Q9UQ84 846 aaKnown RBP17.23■□□□□ 0.35
VPS35-202ENST00000561713 STK38LQ9Y2H1 464 aa17.23■□□□□ 0.35
VPS35-202ENST00000561713 FN1P02751 2386 aaKnown RBP17.23■□□□□ 0.35
VPS35-202ENST00000561713 A0A1W2PPR1 153 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 CDH16O75309 829 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 ACTL6AO96019 429 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 PROCP04070 461 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 TMIGD3P0DMS9 266 aaPredicted RBP17.22■□□□□ 0.35
VPS35-202ENST00000561713 GRK2P25098 689 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 CTSSP25774 331 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 NCBP2P52298 156 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS35-202ENST00000561713 NKX6-1P78426 367 aaPredicted RBP17.22■□□□□ 0.35
VPS35-202ENST00000561713 SORDQ00796 357 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 C2orf80Q0P641 193 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 STX5Q13190 355 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 SNTA1Q13424 505 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 HEPACAMQ14CZ8 416 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 IMPG1Q17R60 797 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 PLCZ1Q86YW0 608 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 TMCO6Q96DC7 493 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 SFXN2Q96NB2 322 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 TAS2R10Q9NYW0 307 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 JKAMPQ9P055 326 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 OR10H1Q9Y4A9 318 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 JMJD1CQ15652 2540 aa17.22■□□□□ 0.35
VPS35-202ENST00000561713 GLRA3O75311 464 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 HRGP04196 525 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 GSTA1P08263 222 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 DDCP20711 480 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 GCKP35557 465 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 KRT20P35900 424 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 GALNT18Q6P9A2 607 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 FRMD7Q6ZUT3 714 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 LUZP2Q86TE4 346 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 EPS8L3Q8TE67 593 aaKnown RBP17.21■□□□□ 0.35
VPS35-202ENST00000561713 MIEF1Q9NQG6 463 aa17.21■□□□□ 0.35
VPS35-202ENST00000561713 BEX4Q9NWD9 120 aaPredicted RBP17.21■□□□□ 0.35
VPS35-202ENST00000561713 KIF2AO00139 706 aaPredicted RBP17.2■□□□□ 0.34
VPS35-202ENST00000561713 CRCPO75575 148 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 CBR3O75828 277 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 HEXAP06865 529 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 SRD5A2P31213 254 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 EVI2BP34910 448 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 OPRM1P35372 400 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 RFX3P48380 749 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 LHX2P50458 406 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 GAS1P54826 345 aa17.2■□□□□ 0.34
VPS35-202ENST00000561713 GFRA1P56159 465 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms