RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 RABL3Q5HYI8 236 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 GCNT6Q5T4J0 391 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 INTS11Q5TA45 600 aaKnown RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 C8orf82Q6P1X6 216 aaPredicted RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 DHFR2Q86XF0 187 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ZC3H7AQ8IWR0 971 aaKnown RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 RNF148Q8N7C7 305 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 C11orf65Q8NCR3 313 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 PLPP5Q8NEB5 264 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 NUP43Q8NFH3 380 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ADCY4Q8NFM4 1077 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 OR7G1Q8NGA0 311 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 OR1N1Q8NGS0 311 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 OR10A6Q8NH74 314 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 OR5AK3PQ8NH89 298 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 OR14A16Q8NHC5 309 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ZNF675Q8TD23 568 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ADAMTS15Q8TE58 950 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ZFP90Q8TF47 636 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ITLN2Q8WWU7 325 aaPredicted RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 JADE3Q92613 823 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 KAT2AQ92830 837 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 UCN3Q969E3 161 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 C8orf44Q96CB5 159 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ASB9Q96DX5 294 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 NEURL3Q96EH8 262 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 REXO5Q96IC2 774 aaKnown RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 SLC35G5Q96KT7 338 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 MS4A4EQ96PG1 132 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 TAAR6Q96RI8 345 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 CPPED1Q9BRF8 314 aaPredicted RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 CRB3Q9BUF7 120 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 CXorf36Q9H7Y0 433 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 TRIM45Q9H8W5 580 aaPredicted RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 ZNF160Q9HCG1 818 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 PLA2G3Q9NZ20 509 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ABCD2Q9UBJ2 740 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 SUCOQ9UBS9 1254 aaKnown RBP10.93□□□□□ -0.66
LDLR-212ENST00000560467 PRODH2Q9UF12 536 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 MAGEL2Q9UJ55 1249 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 C3orf18Q9UK00 162 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 ADGRG4Q8IZF6 3080 aa10.93□□□□□ -0.66
LDLR-212ENST00000560467 TTC36A6NLP5 189 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 VSTM2BA6NLU5 285 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 C17orf105B2RV13 164 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 IDSB3KWA1 339 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 NME4O00746 187 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 PLOD3O60568 738 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 PRAMEF2O60811 474 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 MATN1P21941 496 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 HTR1EP28566 365 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 MC3RP41968 323 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 GSK3BP49841 420 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 CDK9P50750 372 aaKnown RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 OR4D2P58180 307 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 ARG2P78540 354 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 IGLV3-21P80748 117 aaPredicted RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 HPCAP84074 193 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 RBBP4Q09028 425 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 FLOT2Q14254 428 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 RGNQ15493 299 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 ZNF630Q2M218 657 aaPredicted RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 MPEG1Q2M385 716 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 ZNF750Q32MQ0 723 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 HLA-DQA1Q5Y7H0 255 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 ZNF324BQ6AW86 544 aaPredicted RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 RNF130Q86XS8 419 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 METTL25Q8N6Q8 603 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 CDRT4Q8N9R6 151 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 PNPT1Q8TCS8 783 aaKnown RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 NCLNQ969V3 563 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 RELTQ969Z4 430 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 PPWD1Q96BP3 646 aaKnown RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 CNPPD1Q9BV87 410 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 ACTRT3Q9BYD9 372 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 VN1R1Q9GZP7 353 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 PIF1Q9H611 641 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 KAT8Q9H7Z6 458 aaKnown RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 ADAP2Q9NPF8 381 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 LANCL2Q9NS86 450 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 CMTM6Q9NX76 183 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 SLC25A37Q9NYZ2 338 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 CALML5Q9NZT1 146 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 C19orf53Q9UNZ5 99 aaPredicted RBP10.92□□□□□ -0.66
LDLR-212ENST00000560467 LIPT1Q9Y234 373 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 GMEB1Q9Y692 573 aa10.92□□□□□ -0.66
LDLR-212ENST00000560467 TRBV5-3A0A0A0MS03 114 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 TRGV8A0A0C4DH27 118 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 TCRBV16S1A1N1A0A5B0 115 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 FAM220BPB1ANY3 271 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 HPP00738 406 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 F10P00742 488 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 HMGN2P05204 90 aaKnown RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 ALOX5P09917 674 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 HOXB6P17509 224 aaKnown RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 SOX11P35716 441 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 DSTNP60981 165 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 SNRPNP63162 240 aaKnown RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 CEACAM7Q14002 265 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 PRSS53Q2L4Q9 553 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms