RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MCM8Q9UJA3 840 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 OR10H1Q9Y4A9 318 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 NF1P21359 2839 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 GNG14A0A1W2PPG7 69 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CCDC151A5D8V7 595 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 EMC8O43402 210 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 PLOD3O60568 738 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 TSPAN2O60636 221 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 ULK1O75385 1050 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 LY6G6DO95868 133 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 RPS17P08708 135 aaKnown RBP8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CT45A8P0DMV1 189 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CT45A9P0DMV2 189 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 POU2F1P14859 743 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 HK1P19367 917 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 TAC1P20366 129 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CRYGSP22914 178 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 UGT2B10P36537 528 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 HSD17B3P37058 310 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 GSTM5P46439 218 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CDH13P55290 713 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CSTF3Q12996 717 aaKnown RBP8.29□□□□□ -1.08
HDDC3-204ENST00000559834 RASA2Q15283 850 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CT45A2Q5DJT8 189 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF628Q5EBL2 1059 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 LGSNQ5TDP6 509 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 FAM180BQ6P0A1 224 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 LETMD1Q6P1Q0 360 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 PLXDC2Q6UX71 529 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 C20orf204Q6ZNR8 217 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 BTLAQ7Z6A9 289 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 SLC44A2Q8IWA5 706 aaPredicted RBP8.29□□□□□ -1.08
HDDC3-204ENST00000559834 UBQLNLQ8IYU4 475 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF483Q8TF39 744 aaPredicted RBP8.29□□□□□ -1.08
HDDC3-204ENST00000559834 KAT2AQ92830 837 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 MTBPQ96DY7 904 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 PIK3IP1Q96FE7 263 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF845Q96IR2 970 aaPredicted RBP8.29□□□□□ -1.08
HDDC3-204ENST00000559834 VSTM2LQ96N03 204 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 CCL19Q99731 98 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 C1QTNF3Q9BXJ4 246 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 SLC35C2Q9NQQ7 365 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 KLHL28Q9NXS3 571 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 TRPS1Q9UHF7 1281 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 MRTO4Q9UKD2 239 aaKnown RBP8.29□□□□□ -1.08
HDDC3-204ENST00000559834 ARID1AO14497 2285 aa8.29□□□□□ -1.08
HDDC3-204ENST00000559834 UQCRHLA0A096LP55 91 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 DEFB108AA8MXU0 73 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 H7C1Q1 480 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 MANBAO00462 879 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 PPP6CO00743 305 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 COQ9O75208 318 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 SUPT7LO94864 414 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 OR4F21O95013 312 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 CD8BP10966 210 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 TBXA2RP21731 343 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 TCEA1P23193 301 aaKnown RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 MAGEA12P43365 314 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 KIR2DL2P43627 348 aaPredicted RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 CORO7P57737 925 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 RPS3AP61247 264 aaKnown RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 PPP2R2BQ00005 443 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 SLC7A5Q01650 507 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 OCRLQ01968 901 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 CLCQ05315 142 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 DUSP2Q05923 314 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 ACSM2AQ08AH3 577 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 GANABQ14697 944 aaKnown RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 SGCBQ16585 318 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 GLYR1Q49A26 553 aaPredicted RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 CYP27C1Q4G0S4 372 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 SPIN4Q56A73 249 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 TEX35Q5T0J7 233 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 RAET1LQ5VY80 246 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 ACSM2BQ68CK6 577 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 VWA1Q6PCB0 445 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF474Q6S9Z5 364 aaPredicted RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 YTHDF3Q7Z739 585 aaKnown RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 MED12LQ86YW9 2145 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 RELL1Q8IUW5 271 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 FAM9CQ8IZT9 166 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 CDYL2Q8N8U2 506 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 OR9A2Q8NGT5 310 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 UHMK1Q8TAS1 419 aaKnown RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 METTL6Q8TCB7 284 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 GFM2Q969S9 779 aaKnown RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 EXOSC8Q96B26 276 aaKnown RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 EFHD2Q96C19 240 aaPredicted RBP8.28□□□□□ -1.08
HDDC3-204ENST00000559834 COX4I2Q96KJ9 171 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 Q96MF0 132 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 BBS4Q96RK4 519 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 PIGQQ9BRB3 760 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 PINK1Q9BXM7 581 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 FUT8Q9BYC5 575 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 DSN1Q9H410 356 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 UBTD1Q9HAC8 227 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 FOLH1BQ9HBA9 442 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 HHATLQ9HCP6 504 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 FANCFQ9NPI8 374 aa8.28□□□□□ -1.08
HDDC3-204ENST00000559834 NINJ2Q9NZG7 142 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms