RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 ISM1B1AKI9 464 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RTCAO00442 366 aaKnown RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RGS9O75916 674 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 EPPINO95925 133 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 DHFRP00374 187 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 CHRM5P08912 532 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 BUD31P41223 144 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 AP2S1P53680 142 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TRAM1Q15629 374 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TMEM215Q68D42 235 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 ZNF57Q68EA5 555 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 HBMQ6B0K9 141 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 LAMTOR1Q6IAA8 161 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 FAM180BQ6P0A1 224 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 COMTD1Q86VU5 262 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TTLQ8NG68 377 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 OR5M3Q8NGP4 307 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 OTUB2Q96DC9 234 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RNF32Q9H0A6 362 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 GLIPR2Q9H4G4 154 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RANBP3Q9H6Z4 567 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 SLC28A3Q9HAS3 691 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 LHX9Q9NQ69 397 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 SLC35C2Q9NQQ7 365 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 CYSLTR2Q9NS75 346 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 HSPB11Q9Y547 144 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 MTCL1Q9Y4B5 1905 aaKnown RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 A0A0A6YYD5 115 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 SURF4O15260 269 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TGM5O43548 720 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TMPRSS11DO60235 418 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 CLEC3AO75596 197 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RFPL3O75679 317 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 PRNPP04156 253 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 CELP19835 753 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RBMS1P29558 406 aaKnown RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 AVPR1BP47901 424 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RFX3P48380 749 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 CAV3P56539 151 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TAS2R38P59533 333 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 GRIN2CQ14957 1233 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 DECR1Q16698 335 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TMEM35AQ53FP2 167 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 FAM46CQ5VWP2 391 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 RAET1GQ6H3X3 334 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TMEM107Q6UX40 140 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 ZNF547Q8IVP9 402 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 ELMOD2Q8IZ81 293 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 OR8D4Q8NGM9 314 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 AUTS2Q8WXX7 1259 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 SENP5Q96HI0 755 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 DCLRE1CQ96SD1 692 aaKnown RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TMED9Q9BVK6 235 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 SMG9Q9H0W8 520 aaKnown RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TBC1D17Q9HA65 648 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 EMC7Q9NPA0 242 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 KRCC1Q9NPI7 259 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-232ENST00000557487 IL20Q9NYY1 176 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 TAC3Q9UHF0 121 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 NCKAP1Q9Y2A7 1128 aa15.29■□□□□ 0.04
SHMT2-232ENST00000557487 A0A0X1KG70 313 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 ABHD14A-ACY1A0A1B0GW23 586 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 SHOXO15266 292 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 NFATC1O95644 943 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 CHRM4P08173 479 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 ACP5P13686 325 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 CAPZA2P47755 286 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 OMPP47874 163 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 CEP78Q5JTW2 689 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 ZNF697Q5TEC3 545 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 OR4C11Q6IEV9 310 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 ZNF322Q6U7Q0 402 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-232ENST00000557487 LHFPL3Q86UP9 236 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 GID4Q8IVV7 300 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 LRRC17Q8N6Y2 441 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 OR5D16Q8NGK9 328 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 OR5H6Q8NGV6 325 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 WFIKKN2Q8TEU8 576 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 ACOT11Q8WXI4 607 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-232ENST00000557487 DIO2Q92813 273 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 RFT1Q96AA3 541 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 IL17FQ96PD4 163 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 ZNF649Q9BS31 505 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 HDHD5Q9BXW7 423 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 ATP13A2Q9NQ11 1180 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 TEX10Q9NXF1 929 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-232ENST00000557487 H2AFY2Q9P0M6 372 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-232ENST00000557487 EXTL2Q9UBQ6 330 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 MALT1Q9UDY8 824 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 TEKT2Q9UIF3 430 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 RNF215Q9Y6U7 377 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 SCN5AQ14524 2016 aa15.28■□□□□ 0.04
SHMT2-232ENST00000557487 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-232ENST00000557487 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-232ENST00000557487 C7orf66A4D0T2 115 aa15.27■□□□□ 0.04
SHMT2-232ENST00000557487 SMIM30A4D0T7 59 aa15.27■□□□□ 0.04
SHMT2-232ENST00000557487 C12orf71A8MTZ7 269 aa15.27■□□□□ 0.04
SHMT2-232ENST00000557487 GJA1P17302 382 aa15.27■□□□□ 0.04
SHMT2-232ENST00000557487 F8A1P23610 371 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms