RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 GAREM1Q9H706 876 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF556Q9HAH1 456 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 RLIMQ9NVW2 624 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 TMEM9Q9P0T7 183 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 RHCGQ9UBD6 479 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 TMCC3Q9ULS5 477 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 A4GNTQ9UNA3 340 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 WDR45Q9Y484 360 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 CLDN16Q9Y5I7 305 aa13.72□□□□□ -0.21
VPS33B-205ENST00000556096 CCDC88CQ9P219 2028 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 A0A1W2PRQ8 180 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 LNP1A1A4G5 178 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 TMEM150CB9EJG8 249 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 TGFBR3LH3BV60 316 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 M0R3H8 397 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 FAAHO00519 579 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF749O43361 778 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 CBX7O95931 251 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 MYF5P13349 255 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 CRHBPP24387 322 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 RPP38P78345 283 aaKnown RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 DGCR6Q14129 220 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 MEP1AQ16819 746 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 CTU2Q2VPK5 515 aaKnown RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 TYW3Q6IPR3 259 aaKnown RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 DGAT2L6Q6ZPD8 337 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 GALNT12Q8IXK2 581 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 PARP8Q8N3A8 854 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 OR6T1Q8NGN1 323 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 OR52P1PQ8NH57 321 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ZG16BQ96DA0 208 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF578Q96N58 590 aaPredicted RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 PELOQ9BRX2 385 aaKnown RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 FUZQ9BT04 418 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF350Q9GZX5 532 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 QRSL1Q9H0R6 528 aaKnown RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF768Q9H5H4 540 aaKnown RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ENOPH1Q9UHY7 261 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 SLC13A4Q9UKG4 626 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF232Q9UNY5 417 aa13.71□□□□□ -0.21
VPS33B-205ENST00000556096 TMEM184BQ9Y519 407 aaPredicted RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 EP300Q09472 2414 aaPredicted RBP13.71□□□□□ -0.21
VPS33B-205ENST00000556096 ARHGAP33O14559 1287 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 GDF9O60383 454 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 STX11O75558 287 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 NKX2-2O95096 273 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 THBS1P07996 1170 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 GUSBP08236 651 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 CCDC159P0C7I6 412 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 CYP4B1P13584 511 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 FUT4P22083 530 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 ELAVL4P26378 380 aaKnown RBP13.7□□□□□ -0.22
VPS33B-205ENST00000556096 STT3AP46977 705 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 IL5RAQ01344 420 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 DUSP8Q13202 625 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 CDK5R2Q13319 367 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 SERTAD2Q14140 314 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 EXOSC7Q15024 291 aaKnown RBP13.7□□□□□ -0.22
VPS33B-205ENST00000556096 SYT16Q17RD7 645 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 DCST1Q5T197 706 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 DCST2Q5T1A1 773 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 YOD1Q5VVQ6 348 aaPredicted RBP13.7□□□□□ -0.22
VPS33B-205ENST00000556096 LAIR2Q6ISS4 152 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 TMEM71Q6P5X7 295 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 BORAQ6PGQ7 559 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 VRK2Q86Y07 508 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 PEX5LQ8IYB4 626 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 LINC00471Q8N535 108 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 OR9Q2Q8NGE9 314 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 OR52R1Q8NGF1 315 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 DOK4Q8TEW6 326 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 RIT1Q92963 219 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 ZNF566Q969W8 418 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 PRRC1Q96M27 445 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 DGAT2Q96PD7 388 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 NIPSNAP1Q9BPW8 284 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 RBCK1Q9BYM8 510 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 CACYBPQ9HB71 228 aaKnown RBP13.7□□□□□ -0.22
VPS33B-205ENST00000556096 POLE3Q9NRF9 147 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 KLHL28Q9NXS3 571 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 SERTAD3Q9UJW9 196 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 BLOC1S6Q9UL45 172 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 MKLN1Q9UL63 735 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 CDC14AQ9UNH5 594 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 MGAT4BQ9UQ53 548 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 LY6G6EA0A0G2JKS1 128 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 TRBV4-1A0A0J9YWV2 114 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 GFRA3O60609 400 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 UGT2B17O75795 530 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 ADAP00813 363 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 ZNF806P0C7X5 589 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 FOLR1P15328 257 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 RPS4Y1P22090 263 aaKnown RBP13.7□□□□□ -0.22
VPS33B-205ENST00000556096 TGM1P22735 817 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 EPHA2P29317 976 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 NUP107P57740 925 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 GABARAPL2P60520 117 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 CXCR4P61073 352 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 BTG2P78543 158 aa13.7□□□□□ -0.22
VPS33B-205ENST00000556096 PIN1Q13526 163 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms