RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HNRNPFP52597 415 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ADARP55265 1226 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SLC26A5P58743 744 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 EGR4Q05215 589 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ZFP36L1Q07352 338 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 PNRC1Q12796 327 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GTF2H2Q13888 395 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TRIM29Q14134 588 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 FZD2Q14332 565 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TMEM132DQ14C87 1099 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 C14orf28Q4W4Y0 310 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 CCNYL2Q5T2Q4 361 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 C9orf64Q5T6V5 341 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GRTP1Q5TC63 336 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 PM20D1Q6GTS8 502 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF425Q6IV72 752 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GTF2H2CQ6P1K8 395 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 PLXDC2Q6UX71 529 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RAD9BQ6WBX8 426 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 Q6ZSR6 202 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 Q75L30 129 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SFR1Q86XK3 245 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TGIF2LYQ8IUE0 185 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 MMD2Q8IY49 270 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TBC1D21Q8IYX1 336 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 STK40Q8N2I9 435 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 CPSF7Q8N684 471 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 C9orf106Q8NAJ2 232 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SMYD1Q8NB12 490 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 NPEPL1Q8NDH3 523 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF540Q8NDQ6 660 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF548Q8NEK5 533 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SLC24A4Q8NFF2 622 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 FBXO30Q8TB52 745 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 WFDC5Q8TCV5 224 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 CCDC12Q8WUD4 166 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 FIG4Q92562 907 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 FCGR1BQ92637 280 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RFT1Q96AA3 541 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 PCED1BQ96HM7 432 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SLC45A3Q96JT2 553 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 BMFQ96LC9 184 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SAMD8Q96LT4 415 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 CARD6Q9BX69 1037 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TM6SF1Q9BZW5 370 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SLC39A8Q9C0K1 460 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 VN1R1Q9GZP7 353 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 LRRN3Q9H3W5 708 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 DPEP2Q9H4A9 486 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RIBC2Q9H4K1 309 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GPN2Q9H9Y4 310 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GPR173Q9NS66 373 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 P4HTMQ9NXG6 502 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF224Q9NZL3 707 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 C1RLQ9NZP8 487 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TRIM10Q9UDY6 481 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 CYTH4Q9UIA0 394 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 XPO7Q9UIA9 1087 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 DAPK2Q9UIK4 370 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 POU2F3Q9UKI9 436 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 SLC7A7Q9UM01 511 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 MYO6Q9UM54 1294 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 WDR83OSQ9Y284 106 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF510Q9Y2H8 683 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 NSG2Q9Y328 171 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RNF215Q9Y6U7 377 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 COLEC10Q9Y6Z7 277 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 FLNAP21333 2647 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 NSD1Q96L73 2696 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 MYO7BQ6PIF6 2116 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 MEGF8Q7Z7M0 2845 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TCHHQ07283 1943 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 NOTCH1P46531 2555 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF106Q9H2Y7 1883 aaKnown RBP3.42□□□□□ -1.86
LIMA1-208ENST00000551691 A0A0U1RQJ8 604 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 MACROD2A1Z1Q3 448 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 MAGEB16A2A368 324 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 ZSCAN5CA6NGD5 496 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-208ENST00000551691 ANKRD61A6NGH8 418 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 ANKRD63C9JTQ0 380 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 D6RAR5 112 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 NPIPA3F8WFD2 350 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 PRAMEF26H0Y7S4 382 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 H0YCG3 227 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 MCF2LO15068 1137 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 AQP9O43315 295 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 SCO2O43819 266 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 HUS1O60921 280 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 WDR1O75083 606 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 ATP6AP2O75787 350 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 KDM4BO94953 1096 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 OR6B1O95007 311 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 BAG4O95429 457 aaKnown RBP3.42□□□□□ -1.86
LIMA1-208ENST00000551691 LATS1O95835 1130 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 WDPCPO95876 746 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 IL1BP01584 269 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 LCATP04180 440 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 CELA2AP08217 269 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 TMEM191BP0C7N4 346 aa3.42□□□□□ -1.86
LIMA1-208ENST00000551691 PRG2P13727 222 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms