RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 EVA1BQ9NVM1 165 aa17.33■□□□□ 0.37
PRPF40B-208ENST00000548436 QPCTLQ9NXS2 382 aa17.33■□□□□ 0.37
PRPF40B-208ENST00000548436 CNIH4Q9P003 139 aa17.33■□□□□ 0.37
PRPF40B-208ENST00000548436 TDRD6O60522 2096 aaKnown RBP17.33■□□□□ 0.37
PRPF40B-208ENST00000548436 TCRBV21S2A2A0A5A6 115 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 LRRC72A6NJI9 287 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 DUXAA6NLW8 204 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 PVRP15151 417 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 LTBRP36941 435 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 SMSP52788 366 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 ID2Q02363 134 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 MAP4K2Q12851 820 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 DNASE1L3Q13609 305 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 SNAPC1Q16533 368 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 TIMM50Q3ZCQ8 353 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 PRSS41Q7RTY9 318 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 TRIM48Q8IWZ4 208 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 OR52I1Q8NGK6 324 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 GNPDA2Q8TDQ7 276 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 FAM46AQ96IP4 442 aaKnown RBP17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 MND1Q9BWT6 205 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 TCEAL2Q9H3H9 227 aaPredicted RBP17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 TESQ9UGI8 421 aaKnown RBP17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 SLC22A7Q9Y694 548 aa17.33■□□□□ 0.36
PRPF40B-208ENST00000548436 KRBA1A5PL33 1030 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 THY1P04216 161 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 CCNYL3P0C7X3 344 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 GABRG2P18507 467 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 CDH3P22223 829 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 AKT2P31751 481 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 OMPP47874 163 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 YPEL5P62699 121 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 ST3GAL3Q11203 375 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 DUSP5Q16690 384 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 TRMT12Q53H54 448 aaKnown RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 RNLSQ5VYX0 342 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 TYW3Q6IPR3 259 aaKnown RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF730Q6ZMV8 503 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 LSRQ86X29 649 aaPredicted RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 NKAIN4Q8IVV8 208 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 SLC22A18ASQ8N1D0 253 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 FRMD1Q8N878 549 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 FAM3CQ92520 227 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 SAP130Q9H0E3 1048 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 POLE4Q9NR33 117 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 URADA6NGE7 173 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 H0YGG7 62 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 TAF4O00268 1085 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 EIF2S1P05198 315 aaKnown RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 CPMP14384 443 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 RGS8P57771 180 aaPredicted RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 ARF3P61204 181 aaPredicted RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 RELAQ04206 551 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 TSPAN31Q12999 210 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 PUS10Q3MIT2 529 aaKnown RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 PLEKHG7Q6ZR37 379 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 USP53Q70EK8 1073 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 CAMKVQ8NCB2 501 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 PROKR2Q8NFJ6 384 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 OR13H1Q8NG92 308 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 TEX47Q8TBZ9 253 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 NR4A3Q92570 626 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 ZFYVE21Q9BQ24 234 aa17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF443Q9Y2A4 671 aaPredicted RBP17.32■□□□□ 0.36
PRPF40B-208ENST00000548436 CENPVL1A0A0U1RR11 272 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 WWP2O00308 870 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 ACP2P11117 423 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 ENDOUP21128 410 aaKnown RBP17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 TLX1P31314 330 aaPredicted RBP17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 GAS1P54826 345 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 SFSWAPQ12872 951 aaKnown RBP17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 ARHGAP11BQ3KRB8 267 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 TUBA3EQ6PEY2 450 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 ABHD13Q7L211 337 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 MRGPREQ86SM8 312 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 C11orf74Q86VG3 221 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 SAMD14Q8IZD0 417 aaPredicted RBP17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 GJD3Q8N144 294 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 NEURL2Q9BR09 285 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 POLR2J2Q9GZM3 115 aaKnown RBP17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 MTHFD2LQ9H903 347 aaPredicted RBP17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 KLHL28Q9NXS3 571 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 CD207Q9UJ71 328 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 DIMT1Q9UNQ2 313 aaKnown RBP17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 GPR52Q9Y2T5 361 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 WDR45Q9Y484 360 aa17.31■□□□□ 0.36
PRPF40B-208ENST00000548436 LDB3O75112 727 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 UPK1BO75841 260 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ALOX12P18054 663 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 IFNGR2P38484 337 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ETV5P41161 510 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 CRYBB2P43320 205 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ETV1P50549 477 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ILF3Q12906 894 aaKnown RBP eCLIP17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF628Q5EBL2 1059 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 CCNJQ5T5M9 372 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 SLC27A4Q6P1M0 643 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 ZNF836Q6ZNA1 936 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 RASSF6Q6ZTQ3 369 aa17.3■□□□□ 0.36
PRPF40B-208ENST00000548436 MINDY2Q8NBR6 621 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms